Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33680 780 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 437 / 3e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 427 / 2e-140 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 421 / 7e-136 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 420 / 3e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 419 / 5e-133 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 410 / 2e-131 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 404 / 2e-129 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 403 / 3e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 399 / 2e-128 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G067500 [exp] 449 / 7e-145 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 432 / 7e-140 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 429 / 1e-138 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 433 / 3e-138 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 425 / 3e-138 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G021700 [exp] 421 / 7e-138 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 424 / 9e-137 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G104700 [exp] 416 / 7e-136 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 422 / 2e-135 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021232 [exp] 918 / 0 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005643 [exp] 527 / 0 AT2G33680 456 / 8e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 412 / 8e-134 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 409 / 8e-134 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 409 / 4e-131 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 412 / 3e-130 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009913 [exp] 406 / 1e-128 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 404 / 2e-128 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 400 / 2e-128 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 400 / 1e-127 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.013G006800.2 pacid=42811672 polypeptide=Potri.013G006800.2.p locus=Potri.013G006800 ID=Potri.013G006800.2.v4.1 annot-version=v4.1 ATGCCTCACCCTCCACAAAATCGCTCCTTTTACAATTTACTCATTCAATACGCAGACCAAAAATCTCTTAAAAAGGGCCAAATCCTCCATGCTCACATCA TAAAAATCCCATATTTATCTTCCTGTAATTACCTTGCCAATAATCTAATAAAGTTCTATGCTAAATGTGGCCATTTACATGGAGCAAAACTCGTATTCGA AAATCTTAAACACAAAAATGTTGTTTCTTATAATTGTCTCATTCATGGGTTATCTCACAATGGCTCAAAAGGTTCCAACTTTGTGTTAGAACTTTTTCGC CGAATGATAGCTAATAATATCTTACCAGATGCACACACTTTCCCTGGTGTTTTCACCGCTGCGGCATTGAATTTGGGCTGTAATTTTGATGCCCGACAAG TTCATGTGCTTGGTATTAAAACAGCAAGTATTGATGATGTCTTTGTAGGGAGTTCACTTGTTAATTTTTATTGTAAAGTGGGTTGCGTTTTCGAGGCTCG TAAATTGTTTGATAGAATGCCTGAGAGGAATTTGGTATCGTGGACTACGATGATTTCTGGGTATGCGAGTAAACAGATGGCCAAGGAGGCTTTGGGTGTT TTTGGATTGATGAGGTTAGTAGAGGGAAATTTGAACGAGTTTGTGTTTACTAGCGTGCTTAGCGCCTTGGTATGTCCAGAATTTGTTGATAGTGGAAAGC AGGTGCATTGTGTTGTGGTTAAAAATGGGGTGTTGGAATTTGTTTCGGTGCTGAATGCGCTTGTTACTATGTATGCTAAATGTGGAAATTTAAATTATTC TCTTATGCTATTTGAGATGTGCAGTGATAAGAATGCTATAACGTGGTCCGCATTGATCACTGGCTATTCTCAAGCTGGGGATTCTCATAAGGCCTTGAAG TTGTTCTCAAAAATGCATTATGCTGGGTTTGTACCTAGTGAGTTTACCCTTGTTGGGGTTCTTAAAGCTTGCAGTGATGTTGCTGCCATTGAAGAAGGAA AGCAAACGCATGGCTATTTATTGAAGTCAGGATATGAGACTCAAATCTATACAGCGACAGCTTTGGTTGATATGTATGCAAAGTTTGGTTTTACTGGAGA TGCTCGGAAAGGGTTTGATTTTTTGCTAGAACCCGATCTTGTTCTTTGGACATCCATCATAGCGGGTTATGTACAAAATGGGAAAAATGAAGAGGCTCTA AGCATGTATGGTAGAATGCAGATGCGCAAGATTTTGCCAAATGAGCTAACCATGGCCAGTGTCTTGAAAGCATGTTCTAACCTCGCTGCTTTAGAACAAG GAAAGCAAATTCATGCCCGTACCATTAAGTATGGATTGGGTCCAGAACTTTCAATCAGAAGTGCTCTTTCAACTATGTATGCAAAATGTGGGAGTCTAGA AGAGGGAGTCCTCATCTTTAGAAGGATGCTGCAGAGAGACATCGTCTCATGGAATGCAATGATATCAGGACTATCCCAAAATGGGCATGGTAGAGAAGCT CTAGAACTCTTTGAGGAGATGCGTCTAGAGGGCACAAAGCCAGACCATATCACATTTGTGACAGTGCTCTCTGCTTGTAGCCACATGGGAATTGTGAAGA GAGGTTGGGCATATTTCAACATGATGTTTGATGAATTTGGTTTAGTTCCAAGAGTAGAGCATTATGCCTGCATGGTTGATGTCCTGAGTCGTGCAGGGAA GCTCAATGAAGCTAAAGAATTTATTGAATCAGCTATCATAGATCATGGTATGTGCTTATGGAGAATTTTACTGCCTGCCTGCCGAAACCACTGTAATTAT GAATTGGGAGCCTATGCTGGTGAAAAATTAATGGAGTTGGGCTCACGAGAATCATCGGCTTATGTTTTATTGTCGAGTATCTATACTGCCATGGGCAGGT TAGCAGATGTGGTACGGGTCAGGAGGATGATGAAAGTTCGAGGAGTGAGGAAGGAAACTGGGTGTAGCTGGATTGAGCTCAAGAGTCATGTTCACGTATT TGTTGTGGGAGATCAGATACATCCACAGATCGAAGAGATACAAGGGGCAATATGGAGATTAAGAAAACACATGAAGGATGATGGTTACCGACCTGGTCAT GAATCAGCTTCTGTGTCTGTGTGA
AA sequence Show only first row Show all	>Potri.013G006800.2 pacid=42811672 polypeptide=Potri.013G006800.2.p locus=Potri.013G006800 ID=Potri.013G006800.2.v4.1 annot-version=v4.1 MPHPPQNRSFYNLLIQYADQKSLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFR RMIANNILPDAHTFPGVFTAAALNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGV FGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALK LFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEAL SMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREA LELFEEMRLEGTKPDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFGLVPRVEHYACMVDVLSRAGKLNEAKEFIESAIIDHGMCLWRILLPACRNHCNY ELGAYAGEKLMELGSRESSAYVLLSSIYTAMGRLADVVRVRRMMKVRGVRKETGCSWIELKSHVHVFVVGDQIHPQIEEIQGAIWRLRKHMKDDGYRPGH ESASVSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33680			Tetratricopeptide repeat (TPR)...		Potri.013G006800 [exp]	0	1
AT4G22860			Cell cycle regulated microtubu...		Potri.001G114400 [exp]	3.46	0.8785
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.014G167800 [exp]	5.91	0.8791
AT4G19650			Mitochondrial transcription te...		Potri.012G118200 [exp]	7.93	0.8678
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.002G091101 [exp]	10.09	0.8857
AT4G10620			P-loop containing nucleoside t...		Potri.001G010400 [exp]	14.28	0.8814
AT3G10630			UDP-Glycosyltransferase superf...		Potri.008G018200 [exp]	14.42	0.8604
AT5G66360		DIM1B	adenosine dimethyl transferase...		Potri.018G018900 [exp]	16.73	0.8447
AT1G16350			Aldolase-type TIM barrel famil...		Potri.010G173600 [exp]	16.97	0.8536	IMPDH.3
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Potri.015G076100 [exp]	16.97	0.8436
AT5G38730			Tetratricopeptide repeat (TPR)...		Potri.017G108600 [exp]	19.26	0.8297

Compare expression of checked genes

Potri.013G006800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.