Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09320 268 / 6e-86 agenet domain-containing protein (.1) AT3G06520 163 / 3e-46 agenet domain-containing protein (.1) AT1G06340 97 / 2e-24 Plant Tudor-like protein (.1) AT1G11420 96 / 1e-21 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) AT1G26540 89 / 5e-19 Agenet domain-containing protein (.1) AT2G47230 76 / 5e-15 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) AT3G62300 74 / 3e-14 ATDUF7 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) AT1G03300 67 / 8e-12 ATDUF1 DOMAIN OF UNKNOWN FUNCTION 724 1 (.1) AT5G23800 61 / 4e-10 ATDUF10 ,DUF 10 DOMAIN OF UNKNOWN FUNCTION 724 10 (.1) AT1G68580 60 / 1e-09 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G011100 [exp] 518 / 0 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.002G192300 [exp] 142 / 3e-37 AT1G26540 201 / 3e-54 Agenet domain-containing protein (.1) Potri.014G117800 [exp] 136 / 4e-35 AT1G11420 194 / 1e-52 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) Potri.009G151200 [exp] 98 / 1e-24 AT1G06340 141 / 3e-44 Plant Tudor-like protein (.1) Potri.010G149301 [exp] 64 / 9e-13 AT3G06520 71 / 1e-15 agenet domain-containing protein (.1) Potri.009G155250 [exp] 62 / 3e-12 AT1G06340 85 / 1e-22 Plant Tudor-like protein (.1) Potri.001G365800 [exp] 66 / 1e-11 AT5G55600 663 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.010G126700 [exp] 65 / 2e-11 AT1G68580 478 / 1e-160 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.006G250600 [exp] 60 / 7e-10 AT4G32440 272 / 4e-88 Plant Tudor-like RNA-binding protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000615 [exp] 306 / 5e-100 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000353 [exp] 309 / 5e-99 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10010903 [exp] 215 / 2e-66 AT1G09320 136 / 3e-35 agenet domain-containing protein (.1) Lus10017088 [exp] 191 / 2e-56 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1) Lus10037805 [exp] 189 / 5e-56 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1) Lus10031429 [exp] 133 / 3e-35 AT1G09320 131 / 2e-33 agenet domain-containing protein (.1) Lus10010060 [exp] 120 / 1e-29 AT2G47230 168 / 2e-43 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) Lus10027325 [exp] 88 / 8e-21 AT1G06340 95 / 2e-25 Plant Tudor-like protein (.1) Lus10039027 [exp] 81 / 2e-18 AT1G06340 91 / 7e-24 Plant Tudor-like protein (.1) Lus10002437 [exp] 82 / 6e-17 AT3G62300 252 / 1e-73 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF05641 [poplar] [flax] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Potri.013G006900.4 pacid=42811526 polypeptide=Potri.013G006900.4.p locus=Potri.013G006900 ID=Potri.013G006900.4.v4.1 annot-version=v4.1 ATGGCGCCAAAATCAAAATCCAATCAAGACCCAAATTTCAAACCAGGCTCAAAAGTAGAAATCATGTCGGACGAGGCAGGGTTTAGAGGCTCATTCTACA TAGGAACAGTGGTGAAGGCAACAAGAACCCCAGAATTCACAGTCCGATATGAAAAACTGTTTGAAGATGAAGAAGGGACAAAACCCTTGCAAGAAACTGT TAATGAGTTCCAAATAAGGCCAATAGCACCAAGAGAGAAGAAGAGGGAGTTTAAGTTTAGTGAAGAAGTTGATGCTTTTCATAACGATGGGTGGTGGGAA GGTGTGATAACTGAGGTGAATGAAAATGGGAAGTTTGCTGTGTTTTTTAGGAGCACTAAAGAGCAGATTGAGTTTGTTGAGGAGGATTTGAGGTTGCATA GAGAGTGGGTTAATGGGGAGTGGAAACCACCATTGGATGGAGAAGAAGAGAAAGGTGAGATAGAGGAGGTGAAAGAGAAGGGAAATAAGCAGGATTCTAG AAAGAAAAAGAAACTCTCTGAAGAAGACGAGAACGAAGTGACGAAAGAGGTGAAAAGGAGGGTTAGCGAGAAAGTGCCCAATACAACACCAGTGAAGCCT ATTGAATCACTGAAAGATGTGAAGTTTAGCAAGGGAATGCTAGTTGAGGTTAGCAGCGACGAAGATGGTTTTAAAGGTGCTTGGTTTGCTGCTAGTATTG TTGAACCAGTGGGGAAGGACAAGTACCTTGTTGAGTACAAAAGCTTGAGAACAGAAGATGATAGTGGTTTTCTGAGGGAAGAGGTTAACACTATGCACAT AAGGCCTCCACCTCCACAAACTGTAGTTGTTGATCACTTCAAGAAGCTGGAAGAAGTTGATGCTCTGTACAATGATGTCTGGTGGGTGGGTGTAGTTTCT AAGGTAAATACTTTCCCAAAGTATGTTGTCTACTTCAAGGATAACGGTGAGGAATTAGAGTTTAAGCACTCTGACTTAAGGCCACATCAGGACTGGATCA ATGGCAAATGGGTCGCTCCTTCACATGCTTTGAAGCTGTGA
AA sequence Show only first row Show all	>Potri.013G006900.4 pacid=42811526 polypeptide=Potri.013G006900.4.p locus=Potri.013G006900 ID=Potri.013G006900.4.v4.1 annot-version=v4.1 MAPKSKSNQDPNFKPGSKVEIMSDEAGFRGSFYIGTVVKATRTPEFTVRYEKLFEDEEGTKPLQETVNEFQIRPIAPREKKREFKFSEEVDAFHNDGWWE GVITEVNENGKFAVFFRSTKEQIEFVEEDLRLHREWVNGEWKPPLDGEEEKGEIEEVKEKGNKQDSRKKKKLSEEDENEVTKEVKRRVSEKVPNTTPVKP IESLKDVKFSKGMLVEVSSDEDGFKGAWFAASIVEPVGKDKYLVEYKSLRTEDDSGFLREEVNTMHIRPPPPQTVVVDHFKKLEEVDALYNDVWWVGVVS KVNTFPKYVVYFKDNGEELEFKHSDLRPHQDWINGKWVAPSHALKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09320			agenet domain-containing prote...		Potri.013G006900 [exp]	0	1
AT1G04230			Protein of unknown function (D...		Potri.010G078500 [exp]	1.41	0.8024
AT5G30490			unknown protein		Potri.010G151300 [exp]	3.46	0.7915
AT5G38720			unknown protein		Potri.017G108700 [exp]	8.12	0.7840
AT1G75140			unknown protein		Potri.002G262900 [exp]	8.94	0.7318
AT4G19670			RING/U-box superfamily protein...		Potri.015G117600 [exp]	9.21	0.7314
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Potri.008G182500 [exp]	11.48	0.7719
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Potri.017G072100 [exp]	15.81	0.7766
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Potri.003G104200 [exp]	16.73	0.7687
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Potri.014G104500 [exp]	18.33	0.7373
AT3G02760			Class II aaRS and biotin synth...		Potri.019G071400 [exp]	18.49	0.7497

Compare expression of checked genes

Potri.013G006900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.