Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09300 645 / 0 Metallopeptidase M24 family protein (.1.2) AT4G29490 128 / 6e-32 Metallopeptidase M24 family protein (.1) AT2G45240 53 / 2e-07 MAP1A methionine aminopeptidase 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G149500 [exp] 119 / 7e-29 AT4G29490 767 / 0.0 Metallopeptidase M24 family protein (.1) Potri.008G117200 [exp] 54 / 1e-07 AT1G13270 531 / 0.0 methionine aminopeptidase 1B (.1.2) Potri.014G067300 [exp] 53 / 2e-07 AT2G45240 673 / 0.0 methionine aminopeptidase 1A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010905 [exp] 664 / 0 AT1G09300 642 / 0.0 Metallopeptidase M24 family protein (.1.2) Lus10031427 [exp] 652 / 0 AT1G09300 637 / 0.0 Metallopeptidase M24 family protein (.1.2) Lus10008578 [exp] 124 / 1e-30 AT4G29490 768 / 0.0 Metallopeptidase M24 family protein (.1) Lus10032694 [exp] 83 / 1e-16 AT4G29490 687 / 0.0 Metallopeptidase M24 family protein (.1) Lus10021657 [exp] 54 / 1e-07 AT2G45240 696 / 0.0 methionine aminopeptidase 1A (.1) Lus10021701 [exp] 54 / 2e-07 AT1G13270 518 / 0.0 methionine aminopeptidase 1B (.1.2) Lus10001650 [exp] 46 / 4e-05 AT2G45240 637 / 0.0 methionine aminopeptidase 1A (.1) Lus10011514 [exp] 46 / 8e-05 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10035045 [exp] 45 / 8e-05 AT1G13270 466 / 3e-165 methionine aminopeptidase 1B (.1.2) Lus10019308 [exp] 43 / 0.0008 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [poplar] [flax] Peptidase_M24 Metallopeptidase family M24 CL0356 [poplar] [flax] AMP_N-like PF05195 [poplar] [flax] AMP_N Aminopeptidase P, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.013G007100.1 pacid=42812201 polypeptide=Potri.013G007100.1.p locus=Potri.013G007100 ID=Potri.013G007100.1.v4.1 annot-version=v4.1 ATGCAGATTCTTGTACGGAAGTTACTGCAGAGAGCTACTCCCTTCAAACAAGGTATTGTTCGCCGCACTTATTCCACAAATAAGGTCCATGATATTGGAC AGCCAACTCCTGCAACTCATCCTCAGTTGCTAAAGGAAGGGGAGATCACACCAGGCATAACTACTGAGGAGTACATCTCAAGAAGGAAAAGGTTGTTGGA GCTTCTTCCGGAGAAAAGTTTGGCCATCATTGCAGCTGCTCCTATGAAGATGATGACCGATGTTGTGCCTTACACATTTCGACAGGATGCTGACTACTTG TATATCACTGGGTGCCAACAACCTGGTGGTGTGGCAGTATTGGGTCATGAATGTGGTTTATGCATGTTCATGCCAGAAGCAACACGTCATGATGTTATTT GGCAAGGAGAAGTTGCAGGTGTAGAAGCAGCATTAGAGTCATTCAAGGCAGAGAAAGCACATCCATTGAGCAAATTACGTGATATCCTTCCAGGTATGAT AAGGGGGTCCTCAAAGCTGTTTCACAACATGCAGACGGCCACACCAATGTATACAGAATTGGATGATTTTCAAAGGGCAGCTCTGACTGGCAAAGTGAAA GACCTTTCTAATTTCACTCATGAGCTGCGATGGATAAAATCACCTGCTGAGCTTAAGTTAATGAAAGAAGCTGCATCAATTGTCTGCCAGGGTCTTTTGC AGACAATGTTACATTCCAAGATGTATCCTCATGAGGGCATGTTAGCAGCAAAAATTGAATATGAAAGCAAAATGAGAGGTGCCCAGAGGATGGCATTCAA TCCTGTGGTTGGTGGTGGATCTAATGGTAGTGTTATACATTATTCCCGAAATGATCAAAAAATTAAAAATGGTGATCTTGTTTTGATGGATGTTGGGTGT GAGTTACATGGTTATGTCAGTGATCTTACACGTACCTGGCCACCCTGTGGTAGCTTTTCTTCAGTACATGAAGAGCTTTACAATCTTGTACTTGAAACAA ACAAGGAAAGCATGAAACTTTGCCGACCTGGTGTTAGCCTTCGGCAAATTCACAATTATTCGGTTGAGATGTTGTGTAAAGGATTTAAGGAGATTGGAAT TTTGAAGGGTAGTGGAAGCAATTCCTACCATCAGCTGAACCCAACTTCAATAGGTCATTATCTAGGGATGGATGTCCATGATAGTTCTAACATCAGCTAT GATCGTCTATTGAAGCCAGGTGTTGTTATAACAATTGAGCCAGGAGTCTACATCCCATCCATTTTTGATGGTCCAGATAGGTATAGAGGTATTGGGATAA GGATCGAGGATGAAGTCCTAATTACTGAAACTGGTTATGAGGTCCTGACTGGCTCCATGCCGAAAGAAGTAAAACACATAGAGTCCTTGTTGAACAACTA CAGTTGTGGAAATGGAATGGAAGCTCAAAATAATCTGGAAGCTGCTTCCAGTTGA
AA sequence Show only first row Show all	>Potri.013G007100.1 pacid=42812201 polypeptide=Potri.013G007100.1.p locus=Potri.013G007100 ID=Potri.013G007100.1.v4.1 annot-version=v4.1 MQILVRKLLQRATPFKQGIVRRTYSTNKVHDIGQPTPATHPQLLKEGEITPGITTEEYISRRKRLLELLPEKSLAIIAAAPMKMMTDVVPYTFRQDADYL YITGCQQPGGVAVLGHECGLCMFMPEATRHDVIWQGEVAGVEAALESFKAEKAHPLSKLRDILPGMIRGSSKLFHNMQTATPMYTELDDFQRAALTGKVK DLSNFTHELRWIKSPAELKLMKEAASIVCQGLLQTMLHSKMYPHEGMLAAKIEYESKMRGAQRMAFNPVVGGGSNGSVIHYSRNDQKIKNGDLVLMDVGC ELHGYVSDLTRTWPPCGSFSSVHEELYNLVLETNKESMKLCRPGVSLRQIHNYSVEMLCKGFKEIGILKGSGSNSYHQLNPTSIGHYLGMDVHDSSNISY DRLLKPGVVITIEPGVYIPSIFDGPDRYRGIGIRIEDEVLITETGYEVLTGSMPKEVKHIESLLNNYSCGNGMEAQNNLEAASS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09300			Metallopeptidase M24 family pr...		Potri.013G007100 [exp]	0	1
AT5G24340			3'-5' exonuclease domain-conta...		Potri.015G009500 [exp]	8.06	0.6760
AT1G78520			Carbohydrate-binding X8 domain...		Potri.001G380600 [exp]	11.09	0.7212
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G184900 [exp]	16.79	0.7163
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G185100 [exp]	22.47	0.6987
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G184400 [exp]	23.49	0.7015
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182500 [exp]	29.52	0.6911
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182800 [exp]	31.85	0.6916
AT5G42720			Glycosyl hydrolase family 17 p...		Potri.014G183000 [exp]	33.22	0.6970
AT5G39130			RmlC-like cupins superfamily p...		Potri.004G179811 [exp]	33.46	0.6176
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G183800 [exp]	40.29	0.6749

Compare expression of checked genes

Potri.013G007100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.