Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09270 878 / 0 IMPA-4 importin alpha isoform 4 (.1.2.3) AT3G06720 803 / 0 IMPA1, IMPA-1, AIMPALPHA, ATKAPALPHA, AT-IMP importin alpha isoform 1 (.1.2) AT4G16143 770 / 0 IMPA-2 importin alpha isoform 2 (.1.2) AT1G02690 720 / 0 IMPA-6 importin alpha isoform 6 (.1.2) AT4G02150 705 / 0 IMPA-3, MOS6, ATIMPALPHA3 MODIFIER OF SNC1, 6, IMPORTIN ALPHA ISOFORM 3, IMPORTIN ALPHA 3, ARM repeat superfamily protein (.1) AT5G49310 617 / 0 IMPA-5 importin alpha isoform 5 (.1) AT3G05720 563 / 0 IMPA-7 importin alpha isoform 7 (.1) AT5G52000 398 / 9e-135 IMPA-8 importin alpha isoform 8 (.1) AT5G03070 181 / 2e-50 IMPA-9 importin alpha isoform 9 (.1) AT1G32880 164 / 9e-48 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G010900 [exp] 838 / 0 AT3G06720 869 / 0.0 importin alpha isoform 1 (.1.2) Potri.005G020400 [exp] 832 / 0 AT3G06720 880 / 0.0 importin alpha isoform 1 (.1.2) Potri.008G214100 [exp] 823 / 0 AT4G16143 881 / 0.0 importin alpha isoform 2 (.1.2) Potri.010G001400 [exp] 813 / 0 AT4G16143 849 / 0.0 importin alpha isoform 2 (.1.2) Potri.014G124200 [exp] 779 / 0 AT3G06720 868 / 0.0 importin alpha isoform 1 (.1.2) Potri.002G199600 [exp] 769 / 0 AT3G06720 858 / 0.0 importin alpha isoform 1 (.1.2) Potri.016G086600 [exp] 187 / 6e-53 AT5G03070 801 / 0.0 importin alpha isoform 9 (.1) Potri.016G085200 [exp] 59 / 7e-09 AT5G02880 1634 / 0.0 ubiquitin-protein ligase 4 (.1) Potri.006G132000 [exp] 55 / 1e-07 AT5G02880 1614 / 0.0 ubiquitin-protein ligase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031398 [exp] 823 / 0 AT3G06720 925 / 0.0 importin alpha isoform 1 (.1.2) Lus10010933 [exp] 817 / 0 AT3G06720 922 / 0.0 importin alpha isoform 1 (.1.2) Lus10010028 [exp] 802 / 0 AT3G06720 862 / 0.0 importin alpha isoform 1 (.1.2) Lus10037722 [exp] 796 / 0 AT3G06720 884 / 0.0 importin alpha isoform 1 (.1.2) Lus10036330 [exp] 791 / 0 AT3G06720 874 / 0.0 importin alpha isoform 1 (.1.2) Lus10016850 [exp] 778 / 0 AT4G16143 858 / 0.0 importin alpha isoform 2 (.1.2) Lus10036452 [exp] 777 / 0 AT4G16143 825 / 0.0 importin alpha isoform 2 (.1.2) Lus10041124 [exp] 688 / 0 AT4G16143 733 / 0.0 importin alpha isoform 2 (.1.2) Lus10001480 [exp] 191 / 3e-54 AT5G03070 729 / 0.0 importin alpha isoform 9 (.1) Lus10008480 [exp] 189 / 2e-53 AT5G03070 738 / 0.0 importin alpha isoform 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0020 [poplar] [flax] TPR PF01749 [poplar] [flax] IBB Importin beta binding domain CL0020 [poplar] [flax] TPR PF16186 [poplar] [flax] Arm_3 Atypical Arm repeat
Representative CDS sequence Show only first row Show all	>Potri.013G007300.1 pacid=42811891 polypeptide=Potri.013G007300.1.p locus=Potri.013G007300 ID=Potri.013G007300.1.v4.1 annot-version=v4.1 ATGTCGCTGCGACCAGGTACACGAACAGAGGTGAGGAAGAAGTCGTACAAGACTGGAGTGGATGCAGATGAAGCAAGAAGGAGGAGAGAGGACAATTTAC TGGAGATCAGAAAGAATAAAAGAGAAGACAATCTTTTGAAGAAAAGAAGAGAAGGTCTTTTGTTTCAGTCTCAAAGTCAGCCTTTGCTTGATGCTGCTCA ACATGCTGCCAATATCGAAAAAAAGTTGGAGAGTCTTCCGATGATGGTCCAAGGAGTGTGGTCTGATGATCCTTCCTTACAGTTGGAAGCAACCACTCAG TTTAGAAAGCTTTTATCTATTGAGCGCAGTCCTCCTATAGATGATGTAATCAAAGCAGGTGTGGTCCCGCGGTTTGTGGAATTCCTTGGAAGGCACGATC TGCCTCAACTACAATTTGAGGCTGCGTGGGCTTTGACTAATGTTGCTTCTGGAACATCAGAGCATACACGAGTTGTCATTGACCATGGTGCTGTTCCTAT GTTTGTGCAGCTTCTTAGTTCTGGAAGTGATGATGTCAGAGAGCAGGCGGTATGGGCCTTGGGCAATGTTGCGGGCGACTCCCCAAGTTGCAGGGATCTT GTTCTTGGTCATGGTGCTCTGATGCCATTGCTAGCTCAGCTAAATGAGAATTCAAAATTATCCATGCTTAGGAATGCTACCTGGACATTATCCAATTTTT GTCGTGGCAAGCCACCAACACCATTTGATCAGGTGAAGCCTGCTTTGCCAGTTCTCCAGCAACTTATCCACTTGAATGATGAAGAAGTCTTAACAGATGC ATGCTGGGCACTCTCCTATCTTTCAGATGGTCAAAACGACAAAATTCAGGCTGTGATTGATGCTGGTGTCTGTCGACGTCTGGTGGAGCTTCTTCTTCAT CCATCACCTACAGTTCTTATTCCTGCCCTTCGAACAGTTGGAAACATTGTTACAGGCGATGACGGTCAGACTCAGTTTGTAATTGACAATCAAGTCCTCC CTTGTCTCCACCAACTTCTCTTGCAAAATCACAAAAAAAGTATCAAGAAAGAAGCGTGTTGGACAATCTCTAATATCACAGCTGGAAATAGAACTCAAAT ACAGGCTGTTATTGAGGCCAATATTATTCTCCCTCTTGTAAACCTTCTGCAACATGCGGAGTTTGACATTAAGAAGGAGGCTGCCTGGGCTATCTCAAAC GCCACCTCTGCAGGCTCTCATGAACAAATTCAATTTCTGGTGAGCCAGGGTTGCATTAAACCACTGTGTGATCTTCTTATCTGCCCAGACCCCAGGATCG TGACGGTCTGCCTTGAGGGGCTGGAGAACATCCTTAAGGTGGGTGAGGCTGACAAGGAAATGGGCTTAAATGGTGGAGTTAATCTGTATGCGCAAATGGT TGATGAATGTGATGGATTGGATAAGATTGAGAATCTGCAAACTCATGACAACAACGAGATTTATGAAAAGGCAGTGAAGATTTTGGAGAGATACTGGGCT GAGGAAGAAGATGGAGAACCGATTGTCCAAGATGGTGGGGATGGAAATCAGCAAGGTTTTGCTTTTGGAACTAACCAGCCTAGTGTTCCCCAAGGTGGCT TCAAGTTTGGGTGA
AA sequence Show only first row Show all	>Potri.013G007300.1 pacid=42811891 polypeptide=Potri.013G007300.1.p locus=Potri.013G007300 ID=Potri.013G007300.1.v4.1 annot-version=v4.1 MSLRPGTRTEVRKKSYKTGVDADEARRRREDNLLEIRKNKREDNLLKKRREGLLFQSQSQPLLDAAQHAANIEKKLESLPMMVQGVWSDDPSLQLEATTQ FRKLLSIERSPPIDDVIKAGVVPRFVEFLGRHDLPQLQFEAAWALTNVASGTSEHTRVVIDHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDL VLGHGALMPLLAQLNENSKLSMLRNATWTLSNFCRGKPPTPFDQVKPALPVLQQLIHLNDEEVLTDACWALSYLSDGQNDKIQAVIDAGVCRRLVELLLH PSPTVLIPALRTVGNIVTGDDGQTQFVIDNQVLPCLHQLLLQNHKKSIKKEACWTISNITAGNRTQIQAVIEANIILPLVNLLQHAEFDIKKEAAWAISN ATSAGSHEQIQFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKEMGLNGGVNLYAQMVDECDGLDKIENLQTHDNNEIYEKAVKILERYWA EEEDGEPIVQDGGDGNQQGFAFGTNQPSVPQGGFKFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09270		IMPA-4	importin alpha isoform 4 (.1.2...		Potri.013G007300 [exp]	0	1
AT5G26360			TCP-1/cpn60 chaperonin family ...		Potri.018G138200 [exp]	3.60	0.9147
AT5G57300			S-adenosyl-L-methionine-depend...		Potri.018G088400 [exp]	4.00	0.9126
AT1G49660		ATCXE5	carboxyesterase 5 (.1)		Potri.004G143100 [exp]	5.29	0.8981
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Potri.001G370000 [exp]	5.29	0.9108
AT3G02530			TCP-1/cpn60 chaperonin family ...		Potri.017G113601 [exp]	10.24	0.9032
AT1G78430		RIP2	ROP interactive partner 2 (.1)		Potri.001G377900 [exp]	11.95	0.8889
AT4G26550			Got1/Sft2-like vescicle transp...		Potri.014G170700 [exp]	13.03	0.8724
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Potri.007G076900 [exp]	13.26	0.8981
AT1G67680			SRP72 RNA-binding domain (.1)		Potri.006G216400 [exp]	17.32	0.8993
AT1G80190		PSF1	partner of SLD five 1 (.1)		Potri.006G142300 [exp]	18.97	0.8625

Compare expression of checked genes

Potri.013G007300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.