Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05810 116 / 5e-35 unknown protein AT5G26800 110 / 9e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G011800 [exp] 171 / 2e-56 AT5G26800 125 / 2e-38 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015444 [exp] 120 / 2e-36 AT5G26800 147 / 2e-47 unknown protein Lus10011180 [exp] 115 / 1e-34 AT5G26800 143 / 1e-45 unknown protein Lus10031426 [exp] 115 / 2e-34 AT5G26800 143 / 8e-46 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0003 [poplar] [flax] SAM PF09597 [poplar] [flax] IGR IGR protein motif
Representative CDS sequence Show only first row Show all	>Potri.013G007600.1 pacid=42811350 polypeptide=Potri.013G007600.1.p locus=Potri.013G007600 ID=Potri.013G007600.1.v4.1 annot-version=v4.1 ATGGCAATGGCATGGAGGCAGATAATCACAAACACAAAAAGGGCAGTTTCAATCCCAACACAACAAGCAATTTCTACACCTGGGTTCTCTAGATTCTTCT CCAAATCGTCCTCTCGTTACATCGTGAAAGTTGGAATTCCAGAGTTTCTAAATGGAATAGGGAAAGGAGTTGAAGCCCATGTGGCCAAGCTTGAATCTGA AATTGGTGACTTTCACAAACTTCTTGTTACTCGGACTTTAAAGCTCAAGAAACTAGGCATTCCTTGTCAACAGAGGAAGCTGATATTGAAATATGCTCAC AAGTATAGGTTGGGGCTGTGGAGGCCTAGAGCTGAACCTGTGAAAGCCAAATAA
AA sequence Show only first row Show all	>Potri.013G007600.1 pacid=42811350 polypeptide=Potri.013G007600.1.p locus=Potri.013G007600 ID=Potri.013G007600.1.v4.1 annot-version=v4.1 MAMAWRQIITNTKRAVSIPTQQAISTPGFSRFFSKSSSRYIVKVGIPEFLNGIGKGVEAHVAKLESEIGDFHKLLVTRTLKLKKLGIPCQQRKLILKYAH KYRLGLWRPRAEPVKAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05810			unknown protein		Potri.013G007600 [exp]	0	1
AT3G13230			RNA-binding KH domain-containi...		Potri.011G166000 [exp]	1.41	0.8282
AT1G14300			ARM repeat superfamily protein...		Potri.013G124050 [exp]	3.46	0.8075
AT2G18400			ribosomal protein L6 family pr...		Potri.007G024900 [exp]	6.70	0.8138
AT3G16980		NRPE9A, NRPD9A,...	RNA polymerases M/15 Kd subuni...		Potri.008G106900 [exp]	6.70	0.8178
AT1G26470			unknown protein		Potri.008G095100 [exp]	7.87	0.7107
AT3G59650			mitochondrial ribosomal protei...		Potri.013G126200 [exp]	8.71	0.8160
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Potri.001G069100 [exp]	9.53	0.7990	Pt-ARS27.2
AT1G77750			Ribosomal protein S13/S18 fami...		Potri.002G088400 [exp]	9.59	0.8228
AT4G23760			Cox19-like CHCH family protein...		Potri.003G136500 [exp]	10.81	0.7386
AT1G24050			RNA-processing, Lsm domain (.1...		Potri.008G146200 [exp]	12.96	0.7492

Compare expression of checked genes

Potri.013G007600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.