Plant FIBer expression Database

Potri.013G007700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09250 95 / 3e-24 bHLH bHLH149, AIF4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
AT3G05800 91 / 1e-22 bHLH bHLH150, AIF1 AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 (.1)
AT3G17100 72 / 2e-15 bHLH bHLH147, AIF3 sequence-specific DNA binding transcription factors (.1.2)
AT3G06590 54 / 6e-09 bHLH bHLH148, AIF2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G012400
[exp]
229 / 5e-77 AT1G09250 109 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Potri.010G147400
[exp]
61 / 2e-11 AT3G17100 174 / 3e-54 sequence-specific DNA binding transcription factors (.1.2)
Potri.008G103500
[exp]
61 / 3e-11 AT3G17100 174 / 2e-54 sequence-specific DNA binding transcription factors (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010907
[exp]
60 / 7e-11 AT3G06590 81 / 8e-19 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Lus10017065
[exp]
59 / 1e-10 AT3G06590 171 / 1e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Lus10037783
[exp]
59 / 1e-10 AT3G06590 172 / 9e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Lus10031425
[exp]
43 / 2e-05 AT1G09250 51 / 7e-09 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.013G007700.1 pacid=42811007 polypeptide=Potri.013G007700.1.p locus=Potri.013G007700 ID=Potri.013G007700.1.v4.1 annot-version=v4.1
ATGGCAAGCAACCAATCAAACTGTGACGTGTCATCGCAACAAGAACCAAACCAGCAAAGAAAGAAACGCAGAAAACTGACTCATGAAACGACAGAGAGTC
ACCTTCAAAACGACGGCACTGGCGAGACCAAAAACCAGCCTACAGTGAGGTGGCGAACTGACACAGCGAGTCGGATCTATTCGTCGAAGCTTCTAGAGGC
TCTGCGTCGATCATGCCGGATAACTTCTCATCGGGGTGAGAAGACTCGAGAAGTCCGGGAAACCGCTGACAGAGTCCTCGCGGTGGCCGCGCGAGGAAAA
ACACGGTGGAGCCGCGCGATTCTAGCGAAACGCGCGCGGTTGTTGAGAGTGAAGAAGGTGAAGAAACAGAGGGTGGCTCGTGATCGCAAGTCACCGGGGA
GCGAGAAGAGGAGGAAGTTACCACCGGTGGAGAAGAAGGTAAAGGTTTTGAGCCGGTTAGTCCCTGGTTGCAGGAAAGTCTCGTTTGTGAATCTTTTAGA
GGAAGCGAGTGATTATATTGCGGCTTTGGAGATGCAAATTAAGGTTATGACCAATCTTAGTGAAATTCTCACCGTCGCTGGCGGCGGAGGAGGCGGTGGC
GGCTCGTCAAGTTGA
AA sequence
>Potri.013G007700.1 pacid=42811007 polypeptide=Potri.013G007700.1.p locus=Potri.013G007700 ID=Potri.013G007700.1.v4.1 annot-version=v4.1
MASNQSNCDVSSQQEPNQQRKKRRKLTHETTESHLQNDGTGETKNQPTVRWRTDTASRIYSSKLLEALRRSCRITSHRGEKTREVRETADRVLAVAARGK
TRWSRAILAKRARLLRVKKVKKQRVARDRKSPGSEKRRKLPPVEKKVKVLSRLVPGCRKVSFVNLLEEASDYIAALEMQIKVMTNLSEILTVAGGGGGGG
GSSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G09250 bHLH bHLH149, AIF4 basic helix-loop-helix (bHLH) ... Potri.013G007700
[exp]
0 1
AT3G15210 AP2_ERF ATERF4, RAP2.5... RELATED TO AP2 5, ethylene res... Potri.011G115600
[exp]
5.19 0.7987 ERF49,Pt-RAP2.2
AT4G38540 FAD/NAD(P)-binding oxidoreduct... Potri.019G003200
[exp]
13.49 0.8017
AT3G25830 ATTPS-CIN "terpene synthase-like sequenc... Potri.001G308300
[exp]
14.56 0.8210
AT2G18550 HD HB-2, ATHB21 homeobox-2, homeobox protein 2... Potri.005G126100
[exp]
16.12 0.8381
AT5G53970 TAT7 tyrosine aminotransferase 7, T... Potri.007G138002
[exp]
16.52 0.7783
AT3G25810 Terpenoid cyclases/Protein pre... Potri.001G308200
[exp]
20.42 0.8156
Potri.019G014368
[exp]
33.52 0.8048
AT5G06720 ATPA2 peroxidase 2 (.1) Potri.003G215001
[exp]
34.81 0.8043
AT3G62200 Putative endonuclease or glyco... Potri.013G003100
[exp]
35.15 0.7352
AT3G63520 ATNCED1, ATCCD1... carotenoid cleavage dioxygenas... Potri.006G239300
[exp]
40.81 0.7886

Potri.013G007700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.