Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56500 1490 / 0 haloacid dehalogenase-like hydrolase family protein (.1) AT3G07060 77 / 3e-14 EMB1974 embryo defective 1974, NHL domain-containing protein (.1) AT3G14860 58 / 3e-08 NHL domain-containing protein (.1.2) AT2G38740 56 / 4e-08 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G39970 56 / 7e-08 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G21470 56 / 1e-07 ATFMN/FHY riboflavin kinase/FMN hydrolase (.1) AT1G70280 54 / 5e-07 NHL domain-containing protein (.1.2) AT3G48420 51 / 3e-06 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G14890 45 / 0.0005 NHL domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G241366 [exp] 85 / 1e-16 AT3G07060 584 / 0.0 embryo defective 1974, NHL domain-containing protein (.1) Potri.003G086900 [exp] 77 / 3e-15 AT2G38740 359 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G147300 [exp] 67 / 1e-11 AT2G38740 360 / 5e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G107800 [exp] 67 / 6e-11 AT3G14860 553 / 0.0 NHL domain-containing protein (.1.2) Potri.015G088500 [exp] 60 / 3e-09 AT3G48420 434 / 5e-154 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.007G095200 [exp] 58 / 1e-08 AT4G39970 439 / 3e-156 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G387500 [exp] 56 / 1e-07 AT3G14860 534 / 0.0 NHL domain-containing protein (.1.2) Potri.001G147400 [exp] 54 / 1e-07 AT2G38740 350 / 2e-123 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.002G077200 [exp] 54 / 5e-07 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029840 [exp] 1560 / 0 AT1G56500 1528 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10020699 [exp] 1485 / 0 AT1G56500 1467 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10022801 [exp] 77 / 6e-14 AT3G07060 631 / 0.0 embryo defective 1974, NHL domain-containing protein (.1) Lus10011867 [exp] 76 / 2e-13 AT3G07060 621 / 0.0 embryo defective 1974, NHL domain-containing protein (.1) Lus10040116 [exp] 60 / 3e-09 AT2G38740 347 / 3e-122 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10003018 [exp] 60 / 3e-09 AT2G38740 355 / 1e-124 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10018906 [exp] 58 / 2e-08 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10018435 [exp] 57 / 3e-08 AT4G21470 553 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10013663 [exp] 57 / 4e-08 AT3G48420 427 / 4e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10033034 [exp] 56 / 6e-08 AT3G48420 424 / 4e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF01436 [poplar] [flax] NHL NHL repeat CL0137 [poplar] [flax] HAD PF13419 [poplar] [flax] HAD_2 Haloacid dehalogenase-like hydrolase CL0172 [poplar] [flax] Thioredoxin PF13905 [poplar] [flax] Thioredoxin_8 Thioredoxin-like
Representative CDS sequence Show only first row Show all	>Potri.013G007800.5 pacid=42811115 polypeptide=Potri.013G007800.5.p locus=Potri.013G007800 ID=Potri.013G007800.5.v4.1 annot-version=v4.1 ATGAAAGGCCAAGCCATGGCCATGAAACTACTATCCCCTCCATCTTCTCTATCAAGCCCCAGATTTGCTAAATCTCTTTTCTTTTTTACTTCCAATCCAA AAGGGTCAAAACCCATCTCAAGTTTAGTCCAACTTTTCCAACGGAGGTCAAAAAATTTAGTCTTTAATAAAAAAATGGAAGTGAAGGCATGCGTGAAGGT GGAGCAAAAGAGTGAAACTGAAGTAACAGGAAATGAGTGGGGTAAGGTATCTGCTGTGCTTTTTGATATGGATGGAGTGTTGTGCAATAGTGAAGAGCCT TCAAGAATGGCAGGTGTTGATGTTTTTGCTGAGATGGGAGTTGAAGTTACAGTGGACGATTTTGTGCCATTCATGGGCACAGGTGAAGCAAACTTCTTAG GAGGTGTTGCTAATGTAAAGGGAGTCAAGGGATTCGATACCGAAATGGCGAAGAAAAGGTTCTTTGAGATATATCTAGATAAGTATGCAAAACCGAATTC CGGAATAGGATTCCTAGGTGCCCTTGAACTCATTACTCAGTGTAAAAACAAAGGCCTGAAAGTTGCTGTTGCATCTAGTGCTGATCGTATCAAAGTTGAT GCTAATTTAGCAGCTGCTGGCCTACCAGTATCGATGTTTGATGCTATTGTATCAGCAGATGCTTTTGAGAATTTGAAACCAGCTCCTGACATTTTCTTGG CTGCATCAAAAATCTTGGGTGTGCCCACTAGTGAGTGTATTGTCATTGAAGATGCACTAGCTGGAGTACAGGCTGCAAAAGCTGCACAGATGAGATGCAT TGCTGTCACCACTACATTGTCGGAAGAAATTCTAAATGATGCCAGCCCATCTCTTATCAGAAAGGAGATTGGGAATATTTCGCTTGATGATATTCTCGAT GGTGGATCTGGTGGCTATAATGAGAAGATGCAGGGACCTCAGGTTCTGCACACTTCTGCACAAACTTCAGTAGCAATGCTCGAAGAAAGAACAGAAAATG GGTCAATCCTTAACCAAGTTGCTACCAATGACAATGTTTCCTCAATTAAGGGGTTGCAGGGTTCTCGGCGTGATATAGTGAGATATGGCAGTTTGGGTAT TGCTCTTTCTTGTCTGTACTTCACCATCACAAATTGGAAGGCAATGCAATATGCTTCACCTAAAGGTATATGGAACAAGTTGTTTGGAGTTGATACCCCA TCCTTTGAACAGAATGAAAGTATAGGCAACTTAAAATCTTCAAGAGTCAAACAGTTTGTAAAGTATATATCTGATCTAGAAACCAAGGGAAATGCCACCA TTGTGCCAGAATTTCCAGGAAAACTTGATTGGCTGAATACATCTCCACTTCAGTTTCAAAGGGATCTGAAAGGAAAAGTGGTTCTGCTGGATTTTTGGAC ATATTGTTGTATAAATTGTATGCATGTCTTACCAGATCTAGAGTATCTGGAGAAGAAATACAAAGATGCACCGTTCACTGTTGTGGGGGTACATTCAGCT AAGTTCGACAATGAGAAAGATTTAGAAGCCATCCGTAATGCAGTCTTACGCTACAACATCTCTCACCCAGTTGTCAATGATGGAGATATGTTTTTGTGGC GTGAGCTAGGTGTCAGTTCCTGGCCTACATTTGCCATTGTTGGACCCAATGGTAAGCTTATTGCACAATTATCAGGAGAAGGCCGCCGAAAGGATCTTGA TGATTTAATAGAGGCAGTGCTTTTGTATTATGGTGAAAGGAAGATCCTGAACAGCAGACCAATTCCTTTGAGTTTAGAGAAAAACAATGATCCTCGCTTA CTTAGCTCTCCTTTGAAGTTTCCTGGAAAGTTGGCTATTGATGTGCTAAACAACCGACTGTTCATTTCCGATAGCAACCACAACCGCATAGTGGTCACTG ATCTAGATGGAAATTTTATTGCCCAAATTGGCAGCAGTGGAGAGGAAGGACTGCGAGATGGTTCTTTTGATGATGCCACCTTTAATCGCCCTCAGGGTCT GGCTTATAATTCAAAGAAAAATATCCTTTATGTTGCAGATACTGAAAACCATGCTTTGAGGGAGGTTGATTTTGTCAGTGAGAAAGTGCGAACTCTTGCT GGAAATGGAACAAAAGGTTCTGATTACCAAGGAGGTGGAAAAGGAACAGATCAGGTTCTCAACTCCCCATGGGATGTCTCCTTTGAGCCGGTTAATGAGA AAGTTTACATTGCGATGGCTGGTCAACATCAGATATGGGAGCATGACATATCGAATGGAGTTACTAGAGCCTTCAGTGGTGATGGTTATGAAAGAAACTT GAATGGATCAAGCCCTACGAGCACATCATTTGCTCAACCTTCTGGAGTTTCATTATCTCCTGATTTCGAGCTATATGTTGCTGATAGTGAAAGTAGCTCC ATTCGAGTGCTTAGTCTAAGAACCAAAGGAACAAGGTTGCTAGCTGGTGGTGATCCAATTTTCCCTGACAACTTGTTTAAGTTTGGAGACCATGATGGTA TAGGTTCCGAGGTACTTCTTCAACATCCATTGGGTGTATTACACGCCAAGGATGGTCTAATATACATTGCAGATAGCTATAATCACAAGATCAAGAAGTT AGACCTAGCTACTAAAAGGGTCACTACAATAGCAGGAACGGGAAAAGCTGGTTTCAAGGATGGAAAAGCCCTAACTGCCCAGCTCTCAGAGCCGGCGGGA CTCATTGAAGCTGAAAATGGAAGGCTTATCATAGCTGATACGAACAACAGTGTTATCAGGTATCTAGACCTGAACAAGGGAGAAGCTGAACTTCTAACTT TGGAGCTGAAAGGAGTTCAGCCTCCAGCATCAAAATCCAAATCCTTGAAACGTCTCAGGAAGCGATCATCAGCTGACACAGAGACAATCAAAGTTGATGG TTGTTCATCCAGCGAGGGCAACATGCGTATCAAAATATCAGTACCTGAAGAGTATCATTTCTCAAAGGAAGCACGCAGTAAATTCAGTGTTGAAACTGAG CCTGAAAACACAGTGCTGATTGATCCCTCCGAAGGCTATCTAAGTTCTGGAGGAACGGCAAGCATTCACTTTAAGAGATCTGATGCCTCACCTTCAATGG GGAGAATAAATTGCAAGGTTTACTATTGCAAGGAAGATGAGGTCTGCTTATACCAATCACTTCTCTTTGAGGTACCCTTCCAAGAAGAAACTCCAGACTC GACCCCATCAGAAATCACACTTGCATATTTTGTGAAGCCCAAATCTTCACCAAGCAATTTGCAGCTACCAATTACCGGGTGA
AA sequence Show only first row Show all	>Potri.013G007800.5 pacid=42811115 polypeptide=Potri.013G007800.5.p locus=Potri.013G007800 ID=Potri.013G007800.5.v4.1 annot-version=v4.1 MKGQAMAMKLLSPPSSLSSPRFAKSLFFFTSNPKGSKPISSLVQLFQRRSKNLVFNKKMEVKACVKVEQKSETEVTGNEWGKVSAVLFDMDGVLCNSEEP SRMAGVDVFAEMGVEVTVDDFVPFMGTGEANFLGGVANVKGVKGFDTEMAKKRFFEIYLDKYAKPNSGIGFLGALELITQCKNKGLKVAVASSADRIKVD ANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLAASKILGVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEEILNDASPSLIRKEIGNISLDDILD GGSGGYNEKMQGPQVLHTSAQTSVAMLEERTENGSILNQVATNDNVSSIKGLQGSRRDIVRYGSLGIALSCLYFTITNWKAMQYASPKGIWNKLFGVDTP SFEQNESIGNLKSSRVKQFVKYISDLETKGNATIVPEFPGKLDWLNTSPLQFQRDLKGKVVLLDFWTYCCINCMHVLPDLEYLEKKYKDAPFTVVGVHSA KFDNEKDLEAIRNAVLRYNISHPVVNDGDMFLWRELGVSSWPTFAIVGPNGKLIAQLSGEGRRKDLDDLIEAVLLYYGERKILNSRPIPLSLEKNNDPRL LSSPLKFPGKLAIDVLNNRLFISDSNHNRIVVTDLDGNFIAQIGSSGEEGLRDGSFDDATFNRPQGLAYNSKKNILYVADTENHALREVDFVSEKVRTLA GNGTKGSDYQGGGKGTDQVLNSPWDVSFEPVNEKVYIAMAGQHQIWEHDISNGVTRAFSGDGYERNLNGSSPTSTSFAQPSGVSLSPDFELYVADSESSS IRVLSLRTKGTRLLAGGDPIFPDNLFKFGDHDGIGSEVLLQHPLGVLHAKDGLIYIADSYNHKIKKLDLATKRVTTIAGTGKAGFKDGKALTAQLSEPAG LIEAENGRLIIADTNNSVIRYLDLNKGEAELLTLELKGVQPPASKSKSLKRLRKRSSADTETIKVDGCSSSEGNMRIKISVPEEYHFSKEARSKFSVETE PENTVLIDPSEGYLSSGGTASIHFKRSDASPSMGRINCKVYYCKEDEVCLYQSLLFEVPFQEETPDSTPSEITLAYFVKPKSSPSNLQLPITG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56500			haloacid dehalogenase-like hyd...		Potri.013G007800 [exp]	0	1
AT4G37040		MAP1D	methionine aminopeptidase 1D (...		Potri.005G137400 [exp]	1.73	0.9786	MAP1.2
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Potri.010G193300 [exp]	2.00	0.9802
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Potri.013G053100 [exp]	2.23	0.9807
AT1G60230			Radical SAM superfamily protei...		Potri.010G040700 [exp]	2.82	0.9779
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Potri.015G010600 [exp]	3.87	0.9775	Pt-PPH1.1
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Potri.016G106900 [exp]	8.94	0.9739	FBP.1
AT2G41680		NTRC	NADPH-dependent thioredoxin re...		Potri.006G049100 [exp]	8.94	0.9677
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Potri.001G005900 [exp]	9.16	0.9759
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Potri.001G253300 [exp]	10.19	0.9705	Pt-AGT.2
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Potri.005G191400 [exp]	11.87	0.9557

Compare expression of checked genes

Potri.013G007800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.