Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26810 256 / 2e-85 Pectin lyase-like superfamily protein (.1) AT5G18990 244 / 5e-80 Pectin lyase-like superfamily protein (.1) AT2G47280 238 / 1e-77 Pectin lyase-like superfamily protein (.1) AT2G19150 236 / 2e-76 Pectin lyase-like superfamily protein (.1) AT3G24130 233 / 2e-75 Pectin lyase-like superfamily protein (.1) AT2G36700 185 / 6e-57 Pectin lyase-like superfamily protein (.1) AT1G05310 185 / 2e-56 Pectin lyase-like superfamily protein (.1) AT2G36710 185 / 5e-56 Pectin lyase-like superfamily protein (.1) AT3G17060 175 / 5e-53 Pectin lyase-like superfamily protein (.1) AT2G21610 175 / 9e-53 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G012800 [exp] 373 / 9e-131 AT5G18990 281 / 1e-93 Pectin lyase-like superfamily protein (.1) Potri.004G033700 [exp] 370 / 2e-129 AT5G18990 298 / 8e-100 Pectin lyase-like superfamily protein (.1) Potri.017G054700 [exp] 253 / 3e-84 AT3G24130 378 / 2e-132 Pectin lyase-like superfamily protein (.1) Potri.008G104800 [exp] 179 / 2e-54 AT3G17060 477 / 5e-170 Pectin lyase-like superfamily protein (.1) Potri.018G068400 [exp] 178 / 8e-54 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.004G156300 [exp] 168 / 2e-50 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.006G137100 [exp] 166 / 5e-49 AT1G69940 355 / 1e-121 Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 166 / 5e-49 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 166 / 7e-49 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031421 [exp] 320 / 3e-102 AT5G26820 669 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10010912 [exp] 320 / 2e-101 AT5G26820 648 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10016678 [exp] 250 / 5e-82 AT3G24130 357 / 3e-123 Pectin lyase-like superfamily protein (.1) Lus10007136 [exp] 237 / 6e-77 AT3G24130 348 / 2e-119 Pectin lyase-like superfamily protein (.1) Lus10000935 [exp] 225 / 7e-72 AT3G24130 313 / 4e-105 Pectin lyase-like superfamily protein (.1) Lus10000936 [exp] 205 / 5e-65 AT3G24130 308 / 2e-104 Pectin lyase-like superfamily protein (.1) Lus10009997 [exp] 178 / 4e-54 AT5G19730 320 / 1e-107 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 175 / 3e-53 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10040541 [exp] 174 / 1e-52 AT3G17060 471 / 7e-168 Pectin lyase-like superfamily protein (.1) Lus10012942 [exp] 175 / 2e-52 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Potri.013G008100.2 pacid=42812341 polypeptide=Potri.013G008100.2.p locus=Potri.013G008100 ID=Potri.013G008100.2.v4.1 annot-version=v4.1 ATGTGCAGAGAACAGGTGACTATACCAGAAGACAAACCATGTATTTTTCTGGAAGGAAGAGATCGCACCCTAACAACGATTACTTATAATGCACATGAAA GCACTGATACTAGTGCTACTTTTACCTCATCACCAAGCAATATTGTAGCAAAGGGCATAACGTTCAAGAATTCATATAACCTTCCATTCAAGCAAAATAT CAACTATGGAATCAAGATACCTGGAGTTGGAGTAGCCCCAGCACTTTCTGCACGAATTTATGGTGATAAATCAGCTTTCTATGACTGTGCTTTCTTGGGA GTTCAAGATACATTGTGGGATGTCGAAGGCCGGCATCACTTCTTTAACTGCTACATTGAAGGAGCAGTAGATTTTATATTTGGTGCTGGTCAATCTTTCT ATGAGGGTTGCTCGATAAATGTTACTAGTAAAGGCGTCATAACAGCCCAAGGTCGAGAGTTCCCTAATGATCCGAGTGGTTTCATATTTAGTGGATGCAC TATTTCTGGAATTGAAGGTGTTCGAGCATTTCTTGGAAGAGCCTATAGACCATTCTCGAGAGTAATATTTCAAGATTCATATTTCTCAAAAGTGGTTGAT CCTCTTGGGTGGAATGCTTGGGGTTACGCAGGGCAAGAGGAGAATTTCACGTATGTGGAGGTTGATTGTAAGGGACCGGGGTCTAATAAATCGAAGCGTG TTCCATGGGTAAGGAAGCCATCAACAGGACAACACGAATTGTTTTCCAAGCCATCTTTCATCGACCAAGATGGCTGGCTTGCAAAACTACCTCTTTGA
AA sequence Show only first row Show all	>Potri.013G008100.2 pacid=42812341 polypeptide=Potri.013G008100.2.p locus=Potri.013G008100 ID=Potri.013G008100.2.v4.1 annot-version=v4.1 MCREQVTIPEDKPCIFLEGRDRTLTTITYNAHESTDTSATFTSSPSNIVAKGITFKNSYNLPFKQNINYGIKIPGVGVAPALSARIYGDKSAFYDCAFLG VQDTLWDVEGRHHFFNCYIEGAVDFIFGAGQSFYEGCSINVTSKGVITAQGREFPNDPSGFIFSGCTISGIEGVRAFLGRAYRPFSRVIFQDSYFSKVVD PLGWNAWGYAGQEENFTYVEVDCKGPGSNKSKRVPWVRKPSTGQHELFSKPSFIDQDGWLAKLPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26810			Pectin lyase-like superfamily ...		Potri.013G008100 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G034200 [exp]	1.41	0.9830
					Potri.012G100300 [exp]	2.00	0.9783
					Potri.001G320601 [exp]	2.44	0.9784
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.019G123800 [exp]	6.32	0.9587
AT5G53040		GRD, RKD4	RWP-RK domain-containing 4, GR...		Potri.012G016800 [exp]	6.92	0.9524
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Potri.007G130700 [exp]	7.74	0.9581
AT2G01340		At17.1	unknown protein		Potri.004G088200 [exp]	8.36	0.9641
					Potri.007G061801 [exp]	8.94	0.9142
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Potri.002G192600 [exp]	9.74	0.9732
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.017G010000 [exp]	13.41	0.9607

Compare expression of checked genes

Potri.013G008100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.