Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74150 201 / 2e-56 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G18610 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G36360 140 / 2e-35 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT3G05420 132 / 3e-32 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 128 / 9e-31 ACBP5 acyl-CoA binding protein 5 (.1) AT4G04670 124 / 3e-29 Met-10+ like family protein / kelch repeat-containing protein (.1) AT5G04420 121 / 6e-29 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT5G18590 122 / 7e-29 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G07720 94 / 8e-21 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G48180 94 / 1e-20 NSP5 nitrile specifier protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G013000 [exp] 1089 / 0 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 186 / 5e-51 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 182 / 6e-50 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G018800 [exp] 140 / 1e-34 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.008G024700 [exp] 135 / 7e-34 AT2G36360 639 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Potri.008G031200 [exp] 130 / 6e-32 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.005G026900 [exp] 128 / 1e-30 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.010G230300 [exp] 126 / 1e-30 AT5G04420 657 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.004G015200 [exp] 125 / 1e-29 AT4G04670 1162 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010913 [exp] 511 / 5e-175 AT1G18610 177 / 1e-48 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031420 [exp] 459 / 7e-155 AT1G74150 179 / 3e-49 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017860 [exp] 155 / 1e-40 AT1G18610 478 / 1e-164 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10043420 [exp] 143 / 2e-35 AT5G18590 611 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10043424 [exp] 139 / 2e-35 AT2G36360 625 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Lus10034159 [exp] 140 / 4e-35 AT2G36360 658 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Lus10017457 [exp] 137 / 3e-34 AT5G04420 610 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10028825 [exp] 136 / 5e-34 AT5G04420 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10015176 [exp] 130 / 2e-31 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10031497 [exp] 130 / 3e-31 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF13415 [poplar] [flax] Kelch_3 Galactose oxidase, central domain CL0186 [poplar] [flax] Beta_propeller PF13418 [poplar] [flax] Kelch_4 Galactose oxidase, central domain
Representative CDS sequence Show only first row Show all	>Potri.013G008200.1 pacid=42811770 polypeptide=Potri.013G008200.1.p locus=Potri.013G008200 ID=Potri.013G008200.1.v4.1 annot-version=v4.1 ATGGGCTCTCTGGGAGGTGAAACTGCGAAGAAGAAAGCAATGTGGCTCTATCCTAAGGTTTTAGGATTTAACCCTTCTGAAAGATGGGGTCATTCTGCTT GCTACTCTCATGGGATTGTTTATGTCTTTGGTGGATGTTGCGGGGGTCTGGATTTCAGTGATGTTCTCATGCTAAATCTAGATACAATGCTTTGGAACAC AATGGCAACTACAGGTCAAGGGCCTGGTCCAAGAGACAGCCACAGTGCTGTTCTTGTGGGCCGACAAATGATCGTGTTTGGGGGCACGAATGGCTCTAAG AAGGTGAATGATCTTCATGTATTGGACCTTGGGACCAAGGAGTGGATGAGCCCTGAATGCAAAGGGAATCCTCCTTCGCCTCGCGAAAGTCACACTGCAA CACTGATTGGTGATGACAAAATCATGATATTTGGCGGAAGTGGAGAAGGTGAAGCAAATTATTTAAACGATTTGCATGTTTTGGACCTCAAGTCCATGAG ATGGACTTCTCCGGAGGTGAAAGGAAGTATTCCTGCTGCTAGGGATAGTCACAGTGCTGTTGCAATTGGCAGTAAGCTTTTTGTATACGGTGGTGATCGC GGTGATAGGTTTCATGGTGATGTGGATGTTCTGGATACAGATACAATGACTTGGACAAAGCTTGCTGTTCAAGGATCTGCGCCAGGCGTTAGAGCAGGCC ATACTGCTGTGAATATTGGGACAAAGGTTTATGTCATTGGAGGTGTTGGGGACAAGCATTACTACAATGATGTCTGGGTACTTGATGTGAGTGCCTGTTC ATGGACTAAGCTTGATATATCTGGGCAGCAACCTCAAGGGAGGTTTTCTCACACTGCGGTTGTTACGGACTTAAATATTGCCATCTATGGAGGGTGCAGA GAGGATGAGCGTCCTCTCAACCAGCTGTTGGTGTTGCAACTTGAAGCAGAACATCCCAATGGTCGATACAACATTTCCATGTGCAAGATCTTTGGAAACC ATTGGAATCAAGAAAAGAGAAGATTTCTCCGAGGAGCTGCGAACAATTCGACAATGTTTCCGGGGAACAATGAAATAGTCGGAAAGGGCTCTCAAGAATC AGAAGAATCAAAACAACCTTTTCAGTTCAGTTCAGATACTCTGCATCCTACGAAGAAAAGAACTACAAATCTTAAGGCATGGGAGATTGATTCAGAACAA GAAGAGCATTCTCTTTCTCTTTCTCAACATTCATCCCCATCACAATCTGATCAAGAACAGTTCCCAGTTCATAGATCAGTTGATTCCCTCACATCCTGCC AAGGACTTAATTTTTTTAGGCAGTTAAACAAAATTCCGAGAAATTGCCGGGCTGATGATGTTGCGAGTAACCAGAAACAACCTATAACTATAGTCGAAAG AACCCCGTACAGTCTTCAAATTTCAAGAGAGAATAAGAGAGCAGAACAGTATGTTCATGCTGGGCTTGGCAGGCAAGGAACACCATTCCCACCAATGGAA CATAGACCCGTGGAGGCAGGGTCAATTCAAAACCTGGTTGGTGCTGAGGTCCGAGGAAAAGTTGACGGAGCCTTCGACTCAGGCCTTCTAATGACTGCAA CTGTCAATGGAAAGATTTTTAGAGGGGTCTTGTTTGCACCTGCACCCTGTGTAGCTCCAGGAAGGGCCATTCTAGCTCAAAATCATGCATCTCAAGGAAC GCAAATCCACACTGTCCAGCAGTTTCCAAACTCAAATCATATAGATTCCTTAAAGCCCTCTCATCATCCAACAACATTCCCCAAGCCAGAATCTGGTCAG AGTTTTCGACAAACTCAAATGACAAGAACATATCCGGTAATTAGAGCTGCTCCATCATTAGGCAAAGAACCAAAGCCAAGGAGTGATCTTCAAGGTGTGA TTCTAACACTAGGAGGACCTGCAAGTGGTCATGTTGGACAAGTTTAA
AA sequence Show only first row Show all	>Potri.013G008200.1 pacid=42811770 polypeptide=Potri.013G008200.1.p locus=Potri.013G008200 ID=Potri.013G008200.1.v4.1 annot-version=v4.1 MGSLGGETAKKKAMWLYPKVLGFNPSERWGHSACYSHGIVYVFGGCCGGLDFSDVLMLNLDTMLWNTMATTGQGPGPRDSHSAVLVGRQMIVFGGTNGSK KVNDLHVLDLGTKEWMSPECKGNPPSPRESHTATLIGDDKIMIFGGSGEGEANYLNDLHVLDLKSMRWTSPEVKGSIPAARDSHSAVAIGSKLFVYGGDR GDRFHGDVDVLDTDTMTWTKLAVQGSAPGVRAGHTAVNIGTKVYVIGGVGDKHYYNDVWVLDVSACSWTKLDISGQQPQGRFSHTAVVTDLNIAIYGGCR EDERPLNQLLVLQLEAEHPNGRYNISMCKIFGNHWNQEKRRFLRGAANNSTMFPGNNEIVGKGSQESEESKQPFQFSSDTLHPTKKRTTNLKAWEIDSEQ EEHSLSLSQHSSPSQSDQEQFPVHRSVDSLTSCQGLNFFRQLNKIPRNCRADDVASNQKQPITIVERTPYSLQISRENKRAEQYVHAGLGRQGTPFPPME HRPVEAGSIQNLVGAEVRGKVDGAFDSGLLMTATVNGKIFRGVLFAPAPCVAPGRAILAQNHASQGTQIHTVQQFPNSNHIDSLKPSHHPTTFPKPESGQ SFRQTQMTRTYPVIRAAPSLGKEPKPRSDLQGVILTLGGPASGHVGQV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74150			Galactose oxidase/kelch repeat...		Potri.013G008200 [exp]	0	1
AT5G65550			UDP-Glycosyltransferase superf...		Potri.008G024900 [exp]	1.41	0.8321
AT3G60670			PLATZ transcription factor fam...		Potri.002G144900 [exp]	2.23	0.7948
AT3G30530	bZIP	ATBZIP42	basic leucine-zipper 42 (.1)		Potri.004G111100 [exp]	3.46	0.8166
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Potri.005G214300 [exp]	4.58	0.7679
AT4G08150	HD	BP1, KNAT1	BREVIPEDICELLUS 1, BREVIPEDICE...		Potri.002G113300 [exp]	4.89	0.7493	KNAT1.1
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Potri.010G186700 [exp]	6.48	0.8055
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Potri.001G059900 [exp]	12.24	0.6667	G6PD.2
AT1G76750			Protein of unknown function (D...		Potri.001G306700 [exp]	12.96	0.7303
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Potri.004G213300 [exp]	13.41	0.7789
AT2G31955		CNX2	cofactor of nitrate reductase ...		Potri.001G230604 [exp]	13.67	0.7372

Compare expression of checked genes

Potri.013G008200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.