Plant FIBer expression Database

Potri.013G008300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G47350 268 / 5e-83 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
AT1G56460 264 / 2e-81 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
AT3G06660 213 / 6e-63 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G014000
[exp]
837 / 0 AT1G56460 250 / 1e-76 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
Potri.014G119600
[exp]
405 / 6e-135 AT2G47350 272 / 1e-84 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
Potri.002G195132
[exp]
297 / 1e-96 AT1G56460 236 / 5e-74 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
Potri.008G106200
[exp]
246 / 1e-75 AT3G06660 204 / 4e-61 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1)
Potri.002G195066
[exp]
64 / 2e-11 AT2G47350 45 / 2e-05 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
Potri.010G144000
[exp]
48 / 2e-06 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010914
[exp]
508 / 8e-176 AT1G56460 356 / 3e-117 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
Lus10031419
[exp]
496 / 5e-171 AT1G56460 349 / 9e-115 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
Lus10016899
[exp]
219 / 1e-64 AT3G06660 214 / 1e-64 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1)
Lus10037760
[exp]
216 / 7e-64 AT1G56460 209 / 9e-63 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0175 TRASH PF04438 zf-HIT HIT zinc finger
CL0175 PF04795 PAPA-1 PAPA-1-like conserved region
Representative CDS sequence
>Potri.013G008300.6 pacid=42812547 polypeptide=Potri.013G008300.6.p locus=Potri.013G008300 ID=Potri.013G008300.6.v4.1 annot-version=v4.1
ATGGAGGGTTTTGGGTTTAGTGATTCAAACAGTGCTGTTAGGAAGAAGAGGAGTAATACATCCCGTCGTCCACGGAATGACTCACACACACCTTCCGATT
ACATTGATGTTTCATCCTTATCATCCACACCACCTTCAGAAACTGTAAGCAAAGTGTCAAGCGATGACAATAATGATTATGGTTCAATTTCGCGAAAGAA
AAAAGTCAGTTTGATTCTATGCAGTACAAGAGCTTCTTCCACTAACCTTGCTGACTGTGAATCTTCCCAGAATATGATGAAGAATGAAGATGGAGGATTG
GGAGAATCTGATGAAGCTTCCAACAATTGTTCTTTTCGAGGAAGTAACGAGCAGAGGCACAGTGGAGTTGATTCTAGGAGGTCCAGCGAAGGTGTCCTTG
CCCCAGCTAATTGGAAAAGCACAACTAGCTCGGGGCATGTTGGAGGTTTTTCAGATGGAGTAGGAAATGAGAGTAAAGTGAAAGTGAAGCTTAAAGTTGG
TGGTATCACACGAACTATTAATGCAAAGTCCGCATCTGATGGTGCATCTGCTGTTGGGTCGTCATCTTCAAAATCTTCTCGCTTCCCAGATCCCCGGCAG
AAGTTAATTGAGGAGAATTTGGATGACAACCGTTCCTTTACTTCAGGTAAGGGAAGTGGTTTACGAGGAGTCCCGTGGAAGGATTTCTCCAGAAGTGGTC
TAAATGTTAGGAAAACTGATGGTCTGAGAGGTGAGAATCTGTCTTCAAAGCAAACTGATCAGTACGAGCCAGTTCGTAAAAGTAAGCGGGTCCCTAAGAA
ACGGCTATTAGATGGAGTGCTTGATGATGGAGGTGAGGATGATGATGAGATTCGCTACCTTGAAAAAGTCAAGACTTTGAAGATCAGCACTGATTATGGT
GCAGAGTTTGAAGATGAAGAGGGAGGAAGCAGGAAACAGCGGAAGATATCGAGAGTATTGAAGAGAAATGTTGATGGTCTATATGATGTAGATGCTGGAG
ATCATGGATCAACTAGATTTGGCAAGGAGGGTAAGAAATCTAAATCAGGGAGAGTATCTGAAGATACTGATTATGTGGAAGAGGAAGAATTGGGGTCAGA
TGGTGACCCTACATCTAAGAATAAGAAGCCAAGAAAAGAGTTAGCTGATCTATCAGTGGACTCCAAGAAGGAAATGACAGTCACGACACGTCAACGAGCA
CTTCAAACTGGCAAAGATGCCTCCTCTGGTTTTCCTAGTTTAATAGAGTTCCCAAATGGGTTACCTCCAGCTCCCCCTAAAAAGCAAAAAGAGAAACTCA
CTGAAGTGGAACAGCAGTTGAAGAGAGCTGAGGCTCTTCAAAGACGCAGGATGCAAGTTGAAAAGGCAAATAGGGAATCTGAGGCTGAAGCAATCAGAAA
AATACTGGGCCAAGATTCCACTAGGAAGAAACGCGAAGATAAACTGAAGAAACGGCAAGAAGAAATGGCACAGGAGAAAGCAGCAAATGCTATGGTACTT
TCATCAGACCATGTTAGGTGGGTCATGGGTCCGTCTGGAACAACTGTAACATTCCCCGATGAAATGGGCTTGCCTAGTATATTTGACTCCAAGCCTTGCA
GTTACCCTCCTCCCCGGGAGAAATGTGCTGCTCCATCTTGTACAAATCCATACAAGTACCGAGATTCGGAGTCAAAACTACCCCTTTGTAGTCTCCAATG
CTACAAGGCAATTCATGAAAAGGTGCAACCTCTTACTGCCTGTTAA
AA sequence
>Potri.013G008300.6 pacid=42812547 polypeptide=Potri.013G008300.6.p locus=Potri.013G008300 ID=Potri.013G008300.6.v4.1 annot-version=v4.1
MEGFGFSDSNSAVRKKRSNTSRRPRNDSHTPSDYIDVSSLSSTPPSETVSKVSSDDNNDYGSISRKKKVSLILCSTRASSTNLADCESSQNMMKNEDGGL
GESDEASNNCSFRGSNEQRHSGVDSRRSSEGVLAPANWKSTTSSGHVGGFSDGVGNESKVKVKLKVGGITRTINAKSASDGASAVGSSSSKSSRFPDPRQ
KLIEENLDDNRSFTSGKGSGLRGVPWKDFSRSGLNVRKTDGLRGENLSSKQTDQYEPVRKSKRVPKKRLLDGVLDDGGEDDDEIRYLEKVKTLKISTDYG
AEFEDEEGGSRKQRKISRVLKRNVDGLYDVDAGDHGSTRFGKEGKKSKSGRVSEDTDYVEEEELGSDGDPTSKNKKPRKELADLSVDSKKEMTVTTRQRA
LQTGKDASSGFPSLIEFPNGLPPAPPKKQKEKLTEVEQQLKRAEALQRRRMQVEKANRESEAEAIRKILGQDSTRKKREDKLKKRQEEMAQEKAANAMVL
SSDHVRWVMGPSGTTVTFPDEMGLPSIFDSKPCSYPPPREKCAAPSCTNPYKYRDSESKLPLCSLQCYKAIHEKVQPLTAC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G47350 HIT zinc finger ;PAPA-1-like c... Potri.013G008300
[exp]
0 1
AT3G13040 GARP myb-like HTH transcriptional r... Potri.007G003200
[exp]
1.41 0.8837
AT3G55270 MKP1, ATMKP1 ARABIDOPSIS MITOGEN-ACTIVATED ... Potri.010G210900
[exp]
2.23 0.8938
AT5G63520 unknown protein Potri.015G098700
[exp]
2.64 0.8752
AT1G31410 putrescine-binding periplasmic... Potri.003G105100
[exp]
4.69 0.8718
AT5G20030 Plant Tudor-like RNA-binding p... Potri.005G216200
[exp]
5.83 0.8628
AT5G54080 HGO "homogentisate 1,2-dioxygenase... Potri.001G374100
[exp]
5.83 0.8436
AT1G14205 Ribosomal L18p/L5e family prot... Potri.008G087100
[exp]
6.63 0.8572
AT4G30080 ARF ARF16 auxin response factor 16 (.1) Potri.006G127500
[exp]
7.87 0.8322
AT5G61380 AtTOC1, TOC1, A... PSEUDO-RESPONSE REGULATOR 1, T... Potri.015G061900
[exp]
8.94 0.8719
AT4G25280 P-loop containing nucleoside t... Potri.015G129000
[exp]
9.53 0.8179

Potri.013G008300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.