Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56440 471 / 9e-164 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G17970 98 / 1e-21 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT5G09420 81 / 5e-16 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT2G42810 73 / 1e-13 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT1G12270 73 / 1e-13 Hop1 Hop1, stress-inducible protein, putative (.1) AT4G12400 72 / 2e-13 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G62740 72 / 4e-13 Hop2 Hop2, stress-inducible protein, putative (.1) AT4G08320 71 / 4e-13 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G58620 63 / 2e-10 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT1G04190 62 / 2e-10 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G014100 [exp] 728 / 0 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.012G046900 [exp] 97 / 2e-21 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.015G038600 [exp] 94 / 2e-20 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.001G205300 [exp] 82 / 2e-16 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.001G119500 [exp] 74 / 1e-13 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.014G141800 [exp] 72 / 3e-13 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.011G111500 [exp] 70 / 2e-12 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.003G113400 [exp] 69 / 2e-12 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.005G177400 [exp] 69 / 2e-12 AT4G08320 406 / 1e-139 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031418 [exp] 458 / 4e-159 AT1G56440 436 / 1e-150 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10010915 [exp] 444 / 5e-154 AT1G56440 412 / 2e-141 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10042001 [exp] 96 / 6e-21 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10018004 [exp] 95 / 2e-20 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10009682 [exp] 94 / 5e-20 AT3G17970 700 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10025656 [exp] 79 / 8e-16 AT4G08320 379 / 9e-130 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018179 [exp] 77 / 7e-15 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10009050 [exp] 77 / 1e-14 AT3G17970 675 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10022500 [exp] 71 / 6e-13 AT5G65160 652 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10016804 [exp] 68 / 7e-12 AT5G65160 635 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat CL0020 [poplar] [flax] PF13877 [poplar] [flax] RPAP3_C Potential Monad-binding region of RPAP3
Representative CDS sequence Show only first row Show all	>Potri.013G008400.2 pacid=42812168 polypeptide=Potri.013G008400.2.p locus=Potri.013G008400 ID=Potri.013G008400.2.v4.1 annot-version=v4.1 ATGGCTAGGGCTCCAGGCAAGCATGGACGTGATCAAGCTCTGGATTTCCAGGGGTTTTTGAATGATTTGCAGGATTGGGAACTTCTTAAGGACACTGATA AAAAGATGAAGAAGAAGTCACAAGCTTCTGATATGAAGATTGGTGAGGATGAAAGATCAACAGGGAAAACTTCTGCTGTTGATTTTTCAAGTAGTTCAGG AATGTATGATCATGCAAGGAACTTTGATGCAATCAATCGCCTATCAAATAGTTTTGCAATTGATGAGAGTACTGTTGATGCTACCACAGAGAAAGAATTG GGAAATGAGTATTTTAAGCAGAAGAAGTATAAGGAAGCTATTGAGTGCTATTCAAGAAGCATAGCGTTGTCACCAACAGCAGTAGCCTATGCAAATCGAG CAATGGCATATCTCAAAATCAAAAGATTTCCAGAGGCTGAAGATGACTGTACCGAGGCTTTGAATCTAGATGATCGCTACATAAAAGCATACTCACGCAG AGCAACAACAAGAAAGGAATTGGGTAAACTTAAAGAATCCATCGAGGATTCTGAGTTTGCTTTGAAACTGGAACCTAATAACCAGGAAATCAAGAAACAG TATGCTGAGGTCAAATCTTTGTACGAGAAGGAAATTCTCCAGAAAGCATCTGAATCTCTCAGAAGCTCCTTACAAGGAGCACAAAAAGGAGGAAGGTCAG AAGCAAGTGTCAATGGACATGCAGTGCATCCAGTCTCAAATGTCACTCAAAGGACTGGGGCATCTGCTTCTCAAAAAGATAAAGCTAAGGAGAATGATGG AGATGGTGTTGTGAAGAAATATGTCTACGTGGAAGAGATAAAGAACAAAAGCACAGGAGCTGGAAGCAGATCTGATGGTCAATTAGGCAATGATTCTCGT GCAAATGCTATTCCAAGTTCTAATGCGGAGAGTATCCAGAGAAATAACAGAACTGGAAGGCAGGAGCTGAAGGCCTCAGTTAAAGAACTCGCTTCTCAAG CGGCTTCTCGAGCCATGGCTGAAGCTGCAAAAAACATTACACCTCCAAACTCAGCTTATCAATTCGAGGTTTCTTGGCGAGGCTTTTCTGGTGATCGTGC ACTCCAGGCTCACCTCTTGAAGGTAGTAACTCCAAGTGCATTGCCTCAGATATTTAAGAACGCATTGTCTGTTACTATTCTAATCGACATCATCAAGTGT GTGTCCTCATTTTTCATCGATGACATGGATTTGGCTGTTAAATATCTAGAGAACTTGACCGAAGTCCCAAGATTTGACATTCTTATCATGTGTCTTCCAT CTACAGATAAAGCTGATCTTCTCAAGATGTGGGATGAAGTTTTCTGTAGTGAAGCAACGCCAATCAAATATGCTGAGATTCTCGACAAAATGCGATCCAG ATACTGTCCTAAATGTTAA
AA sequence Show only first row Show all	>Potri.013G008400.2 pacid=42812168 polypeptide=Potri.013G008400.2.p locus=Potri.013G008400 ID=Potri.013G008400.2.v4.1 annot-version=v4.1 MARAPGKHGRDQALDFQGFLNDLQDWELLKDTDKKMKKKSQASDMKIGEDERSTGKTSAVDFSSSSGMYDHARNFDAINRLSNSFAIDESTVDATTEKEL GNEYFKQKKYKEAIECYSRSIALSPTAVAYANRAMAYLKIKRFPEAEDDCTEALNLDDRYIKAYSRRATTRKELGKLKESIEDSEFALKLEPNNQEIKKQ YAEVKSLYEKEILQKASESLRSSLQGAQKGGRSEASVNGHAVHPVSNVTQRTGASASQKDKAKENDGDGVVKKYVYVEEIKNKSTGAGSRSDGQLGNDSR ANAIPSSNAESIQRNNRTGRQELKASVKELASQAASRAMAEAAKNITPPNSAYQFEVSWRGFSGDRALQAHLLKVVTPSALPQIFKNALSVTILIDIIKC VSSFFIDDMDLAVKYLENLTEVPRFDILIMCLPSTDKADLLKMWDEVFCSEATPIKYAEILDKMRSRYCPKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56440		TPR5	tetratricopeptide repeat 5, Te...		Potri.013G008400 [exp]	0	1
AT5G10830			S-adenosyl-L-methionine-depend...		Potri.005G067500 [exp]	1.00	0.8729
					Potri.010G182150 [exp]	4.47	0.8536
AT4G21520			Transducin/WD40 repeat-like su...		Potri.004G034600 [exp]	5.00	0.8314
					Potri.009G092750 [exp]	6.70	0.8541
AT1G69380		RRG	RETARDED ROOT GROWTH, Protein ...		Potri.008G092400 [exp]	7.74	0.7953
AT5G48970			Mitochondrial substrate carrie...		Potri.010G024100 [exp]	12.36	0.8041
AT3G46460		UBC13	ubiquitin-conjugating enzyme 1...		Potri.010G206832 [exp]	13.67	0.7946
AT3G62900			CW-type Zinc Finger (.1)		Potri.013G020200 [exp]	14.07	0.7579
AT1G07350		SR45a	serine/arginine rich-like prot...		Potri.001G248100 [exp]	14.69	0.7897
					Potri.008G195401 [exp]	15.29	0.8095

Compare expression of checked genes

Potri.013G008400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.