Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26850 1132 / 0 Uncharacterized protein (.1.2.3.4) AT2G41830 535 / 4e-174 Uncharacterized protein (.1) AT5G21080 498 / 6e-160 Uncharacterized protein (.1) AT1G05960 489 / 3e-157 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G052100 [exp] 569 / 0 AT2G41830 1110 / 0.0 Uncharacterized protein (.1) Potri.016G055100 [exp] 566 / 0 AT2G41830 1184 / 0.0 Uncharacterized protein (.1) Potri.007G128000 [exp] 550 / 3e-180 AT1G05960 1014 / 0.0 ARM repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029842 [exp] 1256 / 0 AT5G26850 1115 / 0.0 Uncharacterized protein (.1.2.3.4) Lus10020697 [exp] 1246 / 0 AT5G26850 1103 / 0.0 Uncharacterized protein (.1.2.3.4) Lus10026298 [exp] 562 / 0 AT2G41830 1083 / 0.0 Uncharacterized protein (.1) Lus10001161 [exp] 538 / 9e-176 AT1G05960 999 / 0.0 ARM repeat superfamily protein (.1.2) Lus10006583 [exp] 511 / 2e-165 AT1G05960 960 / 0.0 ARM repeat superfamily protein (.1.2) Lus10019717 [exp] 498 / 1e-160 AT2G41830 1012 / 0.0 Uncharacterized protein (.1) Lus10042372 [exp] 489 / 4e-155 AT2G41830 840 / 0.0 Uncharacterized protein (.1) Lus10016400 [exp] 253 / 5e-70 AT5G21080 538 / 5e-175 Uncharacterized protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G008500.5 pacid=42811232 polypeptide=Potri.013G008500.5.p locus=Potri.013G008500 ID=Potri.013G008500.5.v4.1 annot-version=v4.1 ATGGGGCTCATTTCTAGGAACATATTCCCTGCTTGTGAGAGCATGTGTGTGTGCTGCCCTGCATTGAGGTCCAGATCTCGGCAACCTGTTAAAAGATATA AGAAACTGCTTGCAGAGATTTTCCCCAAGTCCCTTGATGGCCATCCAAATGAAAGAAAGATTGTCAAGTTATGTGAATATGCTGCTAAAAACCCATTTCG AATCCCAAAGATTGCAAAATATCTAGAAGAAAGGTGCTACAAGGAACTGAGGAGTGGGCATGTCAAGTTCATTAATATTGTTACAGAGGCATACAACAAG TTGCTCTGCATGTGCAAGGATCAGATGGCATACTTTGCCATTAGCTTGTTGAATGTGGTCAATGAACTCTTGGAAAAATCTAAGCAGGATCCATTGATGA TACTTGGATGCCAAACATTAACAAGGTTCATCTATAGTCAGGCAGATGGAACTTACTCTCATAACATTGAAAAGTTTGTTCATAAAGTGTGTAACCTGGC ACGTGAGAATGGGAATGAAAATAATAAAAGTTGCCTGAGGGCTTCAAGTCTGCAGTGCCTCTCAGCCATGGTGTGGTTCATGGCAGAGTTCTCATACATT TTTGCTGCTTTTGACGAGATCGTGCATGTCACATTAGATAACTACGAGCCGGATGAAGAAGATGATGGGAGAGAAGATGCACATCATAATTGGTTGGATG TTGTTAGATGTGAGGGAAGAGTTGCAGATATGGGCTCTAGCTGCATGGCCATCAGACCCCGACCAGAAAAGAAAGATCCGTCTCTTTTGACAAGGGAAGA GATTGACACACCCGGAGTATGGGCTCAAATCTGTATTCAGAGAATGGCTGAGCTGGCAAAGGAGAGTACAACAATGCGCCATGTATTGGACCCAATGCTC GTGTACTTTGATTCTGGACATCACTGGGTTCCTCGGCAAGGGTTGGCCATGATAGTTTTGTCTGATATGTCTTACTTATTGGAGAGTGCAGGCCACCATC AGTTGGTTTTAGCTGCTGTTATACGCCATCTGGACCATAAAAATGTTGCACTTGATCCTCAAGTCAAGTCTTATGTCATAGAAGTTGCTGCAGCTTTGGC TCAGCAAATTAGATCAGGAGCAGTGCTGACAGAGATTGGGTACGTCAGTGATCTATGCAGGCATTTGAGGAAAAGTCTTCAGGCTGCAGTTGAATCTGCA GGAGAGCAAGAATCAAATTTGAACATCTCGCTCCAGAATTCCATTGAAGATTGCTTACTTGAAATTGCTAAAGGAATTTGTGATGCACGACCACTATTTG ACACTATGGCCATAGCACTGGAGAAGCTTCCATCCTCTTCTGGAGTTGTTACCCGTGCAACCATTGGATCTTTGATGATTCTTGCCCATACGATCTCAGT ATCATCAGTCTGTTGTCATTCACAGCAGGTTTTTCCTGAAGTACTTCTTGTCCAACTTTTGAAAGCAATGCTGCATCCAGATGTTAAGGTGCGAGTTGGA GCACACCAGATATTTTCAGCTCTTCTCATTCCAAGTTCTAATCATCCCCTACGTGAAGCTGCTTCCTGGCGATCTGGTTATACTTGCGAACCAAAAGGAT GGCATTCTGATACTGCATCTGCATTTGATTCAATTTCAGCACTACTTGAAAAGCTCCGAAGAGAGAAAGATGGATCCAAAATGGAAAAGCATGGAAATGA TGCCAATGATGGTTATAAAGAAAGGGATGTTGTTGAAGAAGATTGGAAGCAAGGACGTGCCCGAAAGAATTCACCGAATTTTTACAAAATAAGTTCTATT ATTGATAGGACTGCCAGTACGACCAGCTTGTCTGAGGCAGAACCACATATTATGAAGCTTAATGAGGATCAAATAGCACAATTGCTGTCTGCCTTCTGGA TACAAGCCACCCTTCCAGATAACATGCCCTCAAATATTGAAGCTATAGCTCATTCTTTTGTATTGACACTTATTTCTTCGCGATTGAAGAACCCAAATGA CAACCTTGTGGTCCGCTTCTTTCAGCTTCCTCTTTCACTCAGAAATTTATCTTTAGACTTAAACAATGGAATGTTACCTCCAGCATGCCAGAGGTCAATT CTAGTACTATCAACAGGCATGTTGATGTTTGCAGCTAAAATATATCAAATTCCTGAGTTGAATGACTTGCTCAAGTCGTTGCTCCCTTATGATGCTGATC CTTATGTTGGCATTAGTGATGACCTTCAAGTACATGTAAAGGCTCAGGCAGATGTGAGAGGATATGGATCTGTTGCTGATAATCAATTAGCGTCATCTTT ACTCTCTGAACTGCAAAGCAAAATCTTTGAATCTGACAAGGTCTTAATGGACATCTTATTACAGACCCTATCTACCACTACTGAGCTGGAGGTGGATGAC TTGGCTCAGCAATTGTTAGAACCATTTACCCCTGATGATGCATTCATGTATGGTCCAAGATCAATACTTGAGGACCACAATCAAATGGCTTCCCATTCCA AGGAGTCACTCTCCTTCGATGAGGATATTCCAACGAATTCATTAGTTGATGATGATGTGACAAGTGAAGCATCTGTTGCAGACCTTTCCCGCTTCATTCC AAAAATTCCTTCATCCCCTTCTGTCTCCCATGTTATCAGCATTGGACAGCTTTTAGAATCGGCACTCGAGGTAGCAGGTCAAGTGGCAGGGACTTCAGTC TCCACATCACCTCTCCCATATGACACCATGGCTAGACATTGTGAAAATCTGGGCACTGGCACAAGAAAGAAGCTATCCAACTGGTTGACCTATGAAACTC ATTACACTATAGCAAATGAGAGACACTCACCAGCATTCACCGCAAATGGATGCTTAGCACCTTGGAAGATAACAAGCGATGTTGGAAACATCAAGGAAGC TGCAAAGCCAGTAGGCCCATTCTTGGCTATGAGGCTACCTCCGGCAAGTCCCTTTGACAACTTCCTCAAGGCAGCTGGCTGTTGA
AA sequence Show only first row Show all	>Potri.013G008500.5 pacid=42811232 polypeptide=Potri.013G008500.5.p locus=Potri.013G008500 ID=Potri.013G008500.5.v4.1 annot-version=v4.1 MGLISRNIFPACESMCVCCPALRSRSRQPVKRYKKLLAEIFPKSLDGHPNERKIVKLCEYAAKNPFRIPKIAKYLEERCYKELRSGHVKFINIVTEAYNK LLCMCKDQMAYFAISLLNVVNELLEKSKQDPLMILGCQTLTRFIYSQADGTYSHNIEKFVHKVCNLARENGNENNKSCLRASSLQCLSAMVWFMAEFSYI FAAFDEIVHVTLDNYEPDEEDDGREDAHHNWLDVVRCEGRVADMGSSCMAIRPRPEKKDPSLLTREEIDTPGVWAQICIQRMAELAKESTTMRHVLDPML VYFDSGHHWVPRQGLAMIVLSDMSYLLESAGHHQLVLAAVIRHLDHKNVALDPQVKSYVIEVAAALAQQIRSGAVLTEIGYVSDLCRHLRKSLQAAVESA GEQESNLNISLQNSIEDCLLEIAKGICDARPLFDTMAIALEKLPSSSGVVTRATIGSLMILAHTISVSSVCCHSQQVFPEVLLVQLLKAMLHPDVKVRVG AHQIFSALLIPSSNHPLREAASWRSGYTCEPKGWHSDTASAFDSISALLEKLRREKDGSKMEKHGNDANDGYKERDVVEEDWKQGRARKNSPNFYKISSI IDRTASTTSLSEAEPHIMKLNEDQIAQLLSAFWIQATLPDNMPSNIEAIAHSFVLTLISSRLKNPNDNLVVRFFQLPLSLRNLSLDLNNGMLPPACQRSI LVLSTGMLMFAAKIYQIPELNDLLKSLLPYDADPYVGISDDLQVHVKAQADVRGYGSVADNQLASSLLSELQSKIFESDKVLMDILLQTLSTTTELEVDD LAQQLLEPFTPDDAFMYGPRSILEDHNQMASHSKESLSFDEDIPTNSLVDDDVTSEASVADLSRFIPKIPSSPSVSHVISIGQLLESALEVAGQVAGTSV STSPLPYDTMARHCENLGTGTRKKLSNWLTYETHYTIANERHSPAFTANGCLAPWKITSDVGNIKEAAKPVGPFLAMRLPPASPFDNFLKAAGC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26850			Uncharacterized protein (.1.2....		Potri.013G008500 [exp]	0	1
AT5G36290			Uncharacterized protein family...		Potri.019G053400 [exp]	6.63	0.8748
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Potri.006G079300 [exp]	8.00	0.8971	CAS.3
AT1G60070			Adaptor protein complex AP-1, ...		Potri.016G104700 [exp]	8.30	0.9100
AT3G45850			P-loop containing nucleoside t...		Potri.001G233700 [exp]	8.94	0.9078
AT2G47500			P-loop nucleoside triphosphate...		Potri.002G201000 [exp]	12.00	0.9082
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.002G151400 [exp]	13.71	0.9097
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Potri.008G106000 [exp]	17.23	0.8948	ALDH22.1
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Potri.018G089700 [exp]	19.39	0.9082	Pt-VLN4.2
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Potri.011G024000 [exp]	20.19	0.8850	Pt-SPIKE1.3
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Potri.002G246500 [exp]	21.63	0.8768

Compare expression of checked genes

Potri.013G008500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.