Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74875 110 / 2e-29 unknown protein AT1G67623 109 / 2e-28 F-box family protein (.1) AT2G35280 66 / 2e-13 F-box family protein (.1) AT5G50450 57 / 1e-09 HCP-like superfamily protein with MYND-type zinc finger (.1) AT3G30430 53 / 5e-09 F-box family protein (.1) AT1G67340 56 / 7e-09 HCP-like superfamily protein with MYND-type zinc finger (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G321400 [exp] 317 / 2e-110 AT1G67623 102 / 6e-26 F-box family protein (.1) Potri.015G096200 [exp] 69 / 2e-13 AT1G67340 438 / 3e-154 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.012G097600 [exp] 64 / 7e-12 AT1G67340 436 / 2e-153 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.001G056800 [exp] 62 / 5e-11 AT1G67340 499 / 2e-177 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.003G171400 [exp] 60 / 3e-10 AT1G67340 484 / 1e-171 HCP-like superfamily protein with MYND-type zinc finger (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037978 [exp] 182 / 4e-57 AT1G67623 82 / 3e-18 F-box family protein (.1) Lus10038709 [exp] 181 / 1e-56 AT1G67623 90 / 3e-21 F-box family protein (.1) Lus10030128 [exp] 145 / 6e-43 AT1G67623 71 / 2e-14 F-box family protein (.1) Lus10022147 [exp] 130 / 2e-38 AT1G67623 78 / 5e-18 F-box family protein (.1) Lus10005844 [exp] 128 / 2e-37 AT1G67623 76 / 3e-17 F-box family protein (.1) Lus10023768 [exp] 101 / 3e-27 AT1G74875 66 / 6e-14 unknown protein Lus10006434 [exp] 97 / 9e-24 AT1G67623 61 / 1e-10 F-box family protein (.1) Lus10038720 [exp] 89 / 7e-22 ND 41 / 8e-05 Lus10030790 [exp] 82 / 5e-18 AT1G67623 57 / 4e-09 F-box family protein (.1) Lus10037021 [exp] 61 / 2e-10 AT1G67340 291 / 8e-97 HCP-like superfamily protein with MYND-type zinc finger (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G008800.1 pacid=42811150 polypeptide=Potri.013G008800.1.p locus=Potri.013G008800 ID=Potri.013G008800.1.v4.1 annot-version=v4.1 ATGGTGAATAGAAAGAAAAACATGACAAAGGGGAGAAGAAAAACTAGTCGTCATGAGTTTTTCAAGTACTTTCCCAAAGATTTATTGACAGAAGTTCTTG CTCGCGTGGCCTCTGCATCGATTTCAGATCTCTTCACAGCTAAATTAAGCTGCAAAGAGTTTCTTGAAGCAGCATCAGAGAACTATATTTTTGAACACAT CACAATCGAGAAACTCCCAGTTATTCCTTGGAGGATTAGCCACGGTGCCTCCTCTTTCTTGGCCCGTTGCAAGGAGAATGGGAACCCTGAAGCTTTATTT AGACAAGGGATGGTCGAGTTCTTTAGTTCCAACAAACCAGAATCAGGATTCCAACACTTGAAGAACGCGGCCAGAAAAGGGCACGTAGAAGCAATATACA CATGCGGCGTCATCCTTGTATGCCATGGCGGGCAATTTAAACAAGAGGGTATAGAACTGCTTTCTTCTCTGAAGAACTACAAATCAAGACACCGCACAAT TAAAGAGTGTAGAGACAAAATAAAAGAGATTCTTCAAAGCATGTGGATTGACAGAAGGGAAGCCGGTATTGGACCAGAAGAACCCAAGAGCCATGGAAGA ACCTGCAACTGTAGCAAATTTAACAAGAGAGGATGGATTGATGAGGAAGAGTATACCACTTGTGATTATTGCGTATGGGATCATGAAGCAACTCTGTTTT GTAAAATTCTAAGGGCTAGAGGCTTTGGAATATCATAA
AA sequence Show only first row Show all	>Potri.013G008800.1 pacid=42811150 polypeptide=Potri.013G008800.1.p locus=Potri.013G008800 ID=Potri.013G008800.1.v4.1 annot-version=v4.1 MVNRKKNMTKGRRKTSRHEFFKYFPKDLLTEVLARVASASISDLFTAKLSCKEFLEAASENYIFEHITIEKLPVIPWRISHGASSFLARCKENGNPEALF RQGMVEFFSSNKPESGFQHLKNAARKGHVEAIYTCGVILVCHGGQFKQEGIELLSSLKNYKSRHRTIKECRDKIKEILQSMWIDRREAGIGPEEPKSHGR TCNCSKFNKRGWIDEEEYTTCDYCVWDHEATLFCKILRARGFGIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74875			unknown protein		Potri.013G008800 [exp]	0	1
AT1G11480			eukaryotic translation initiat...		Potri.017G041300 [exp]	10.58	0.9472
AT3G50940			P-loop containing nucleoside t...		Potri.001G392300 [exp]	11.57	0.9246
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.002G009900 [exp]	12.84	0.9888
AT1G06280	AS2	LBD2	LOB domain-containing protein ...		Potri.013G123900 [exp]	13.96	0.9979
AT5G16460			Putative adipose-regulatory pr...		Potri.013G085850 [exp]	15.74	0.9812
AT4G16265		NRPE9B, NRPD9B,...	RNA polymerases M/15 Kd subuni...		Potri.010G142500 [exp]	17.66	0.9967
AT3G10330			Cyclin-like family protein (.1...		Potri.017G093100 [exp]	19.82	0.9276
AT4G27670		HSP21	heat shock protein 21 (.1)		Potri.015G005801 [exp]	20.56	0.9949
					Potri.006G062050 [exp]	21.63	0.9979
					Potri.014G065951 [exp]	22.97	0.9947

Compare expression of checked genes

Potri.013G008800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.