Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24100 202 / 8e-59 ASG1 ALTERED SEED GERMINATION 1, unknown protein AT4G30780 201 / 3e-57 unknown protein AT3G05770 142 / 2e-37 unknown protein AT1G54300 130 / 1e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G014600 [exp] 630 / 0 AT2G24100 167 / 5e-46 ALTERED SEED GERMINATION 1, unknown protein Potri.018G102800 [exp] 216 / 4e-63 AT4G30780 501 / 1e-172 unknown protein Potri.006G180500 [exp] 216 / 6e-63 AT4G30780 503 / 2e-173 unknown protein Potri.003G185050 [exp] 209 / 7e-61 AT2G24100 392 / 2e-132 ALTERED SEED GERMINATION 1, unknown protein Potri.001G041800 [exp] 208 / 2e-60 AT2G24100 363 / 5e-121 ALTERED SEED GERMINATION 1, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010920 [exp] 232 / 5e-71 AT2G24100 184 / 8e-54 ALTERED SEED GERMINATION 1, unknown protein Lus10036602 [exp] 211 / 8e-61 AT4G30780 511 / 5e-176 unknown protein Lus10035819 [exp] 210 / 2e-60 AT4G30780 514 / 3e-177 unknown protein Lus10041622 [exp] 190 / 4e-54 AT2G24100 351 / 1e-116 ALTERED SEED GERMINATION 1, unknown protein Lus10024097 [exp] 188 / 3e-53 AT2G24100 335 / 2e-110 ALTERED SEED GERMINATION 1, unknown protein Lus10029847 [exp] 167 / 8e-44 AT2G24100 160 / 6e-42 ALTERED SEED GERMINATION 1, unknown protein Lus10029846 [exp] 156 / 2e-41 AT2G24100 137 / 2e-35 ALTERED SEED GERMINATION 1, unknown protein Lus10020694 [exp] 147 / 3e-38 AT2G24100 145 / 5e-38 ALTERED SEED GERMINATION 1, unknown protein Lus10024256 [exp] 76 / 1e-15 AT2G24100 59 / 3e-10 ALTERED SEED GERMINATION 1, unknown protein Lus10036316 [exp] 0 / 1 ND 42 / 4e-04
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G009000.1 pacid=42810956 polypeptide=Potri.013G009000.1.p locus=Potri.013G009000 ID=Potri.013G009000.1.v4.1 annot-version=v4.1 ATGGTTGAAGAACATGGTGGATTCCATTTGTGGGCTGGTGGTGATAATGGTAATGGTTTTGAAGATTCAGAAGATTTTGAGAGATTGCTTTATGGAAATA ATGTTAATGAAAGTAATGAGCTTGGGTTTGAAGTAAACCAGAAAATTATAGATACACCCAAATTGAGCCATGATCAGGATGAGATGGCTAGAAAGCTTAT GCAGTTGAATCCACTTGGTTTACATCTCAGTATAACACCAAACTTGATGAACTCAATAACGAATCCTAACTATACTACAACAGTTGAAGCCGGGGCAACC TGTGAATCAAGTGACCAAAGCAGGACTAGCAGTGATTTTGGTCAGCAACCAATGTCCGAGAAGTTGAAGGCTTCCAACTTTGCTGCCACATTTATCAAAA TCGGATCTTGGGAGAGAAAATCTAGAAATGAAGGTGATCTAGTGGCTAAATGTTATTTTGCTAAAAAGAAGCTGGTGTGGGAACTCTTGAAAGGGGGGCT GAAAAACAAGATTGAGATTCAATGGAATGATATAATTGGAATAAATGCTTTAATGCAGGAGAATCAGCTTGGAATTCTACAAATTGAGTTAAACCAGCCC CCTACCTTCCATGAGGAAACCGATCCGCAACCACGGAAACATACCATTTGGAAGCCAGCATCAGACTTCACTGGAGGGCAAGCTTCCATTTGCAGGAGGC ATTTTCTTACATTTCCTGCTGGATACCTTGACAAACACTATGAGAAGCTTCTACTTAATGAACCGCGGCTGTTTGAATTGAGCAAGCAGTCTTTTCCAAC GCTGAAAAATCCCTACTTTCGTTCTAAGTTTTACGGCTATAGAGGAATCTCTTTCGATTTTAATCGAAGTGGACAGGATATCCACCCGGGAATGCAGTTT AATTATCCAAATTTTCCTCCACATCCAGTCCAGATTCAGCATTTGCAACCTTATGGGCATACAGGCTTGTCATCTTTTAAGGAAATTCCTTCACCATCAT CAGTCATGGATTTTTCGCCTTCAGATACCTGCAATGTCCCCGAGAGTCGAAGGATAGCTCTTTGGGGTCAAGGGACGAGCAATTACACAGATGCTTTAGC AAGGAATCAAGGTCTAGTTCCTGGTGTCCCATCAACTGAGGTGCATCCAGCTGTTCCTTTGCAGAACTACAACTTTACAAGTTCAGGTCAGGTAGCTGAG TTTAATAATAACTATGCAGCTAAAGCTCTGAGTGACCTCGAAAACCAATTGCTTGGTGACATGCAAGTTGGAAGCTACGATGAGAAGTATCATATGGAAA GGGTCCTGTCGCTGAACCAATTAGTCAATCTTAACGAGAAAGTTAACCCAGAAAGTAATAATGCTTCCCAGGAAACTTTCTACAGCCAAGATAGTAGTGC CGAGGAGAACTTGGTATTTAGTACCGGAGAGAATGCAAATGAAATTAGTGGGCAATTTTATGAGCAGCAGCCAATTACTAGCATGCCTCAGATTCATACT GCCAATCTGCTGATGCCTCAACAATGGAACAACTTGCCCTATGATTGTGTCAATAGCCCTAACCTAACAGTCGATGAGCTTGGACATGTTAAAAACTTCA ACAGCAGCAATTGGAGCTGA
AA sequence Show only first row Show all	>Potri.013G009000.1 pacid=42810956 polypeptide=Potri.013G009000.1.p locus=Potri.013G009000 ID=Potri.013G009000.1.v4.1 annot-version=v4.1 MVEEHGGFHLWAGGDNGNGFEDSEDFERLLYGNNVNESNELGFEVNQKIIDTPKLSHDQDEMARKLMQLNPLGLHLSITPNLMNSITNPNYTTTVEAGAT CESSDQSRTSSDFGQQPMSEKLKASNFAATFIKIGSWERKSRNEGDLVAKCYFAKKKLVWELLKGGLKNKIEIQWNDIIGINALMQENQLGILQIELNQP PTFHEETDPQPRKHTIWKPASDFTGGQASICRRHFLTFPAGYLDKHYEKLLLNEPRLFELSKQSFPTLKNPYFRSKFYGYRGISFDFNRSGQDIHPGMQF NYPNFPPHPVQIQHLQPYGHTGLSSFKEIPSPSSVMDFSPSDTCNVPESRRIALWGQGTSNYTDALARNQGLVPGVPSTEVHPAVPLQNYNFTSSGQVAE FNNNYAAKALSDLENQLLGDMQVGSYDEKYHMERVLSLNQLVNLNEKVNPESNNASQETFYSQDSSAEENLVFSTGENANEISGQFYEQQPITSMPQIHT ANLLMPQQWNNLPYDCVNSPNLTVDELGHVKNFNSSNWS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.013G009000 [exp]	0	1
AT1G78510		SPS1	solanesyl diphosphate synthase...		Potri.011G099500 [exp]	4.12	0.7579
AT1G17050		SPS2	solanesyl diphosphate synthase...		Potri.011G101200 [exp]	10.39	0.7450
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Potri.016G122500 [exp]	44.97	0.7248	GRAS66
AT1G20180			Protein of unknown function (D...		Potri.002G067300 [exp]	61.60	0.6803
					Potri.008G112166 [exp]	69.79	0.6212
					Potri.010G228550 [exp]	72.15	0.6397
AT5G36130			Cytochrome P450 superfamily pr...		Potri.003G222001 [exp]	99.40	0.6707
					Potri.003G162750 [exp]	100.48	0.6508
AT5G20045			unknown protein		Potri.008G015800 [exp]	114.89	0.6491
AT2G38640			Protein of unknown function (D...		Potri.016G143000 [exp]	138.70	0.6448

Compare expression of checked genes

Potri.013G009000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.