Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56350 676 / 0 Peptide chain release factor 2 (.1) AT5G36170 238 / 6e-73 ATPRFB, HCF109 high chlorophyll fluorescent 109 (.1.2.3) AT2G47020 158 / 3e-43 Peptide chain release factor 1 (.1.2) AT3G62910 129 / 8e-33 APG3 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) AT3G57190 105 / 1e-24 PrfB3 peptide chain release factor 3, peptide chain release factor, putative (.1) AT1G33330 63 / 8e-11 Class I peptide chain release factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G075800 [exp] 246 / 3e-76 AT5G36170 671 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Potri.014G114000 [exp] 160 / 4e-44 AT2G47020 579 / 0.0 Peptide chain release factor 1 (.1.2) Potri.014G133400 [exp] 141 / 3e-37 AT3G62910 549 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Potri.006G045200 [exp] 113 / 4e-27 AT3G57190 426 / 7e-148 peptide chain release factor 3, peptide chain release factor, putative (.1) Potri.002G188200 [exp] 105 / 2e-24 AT2G47020 380 / 3e-130 Peptide chain release factor 1 (.1.2) Potri.019G063800 [exp] 63 / 6e-11 AT1G33330 211 / 3e-68 Class I peptide chain release factor (.1) Potri.010G181600 [exp] 48 / 3e-07 AT5G36170 88 / 2e-22 high chlorophyll fluorescent 109 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010922 [exp] 700 / 0 AT1G56350 646 / 0.0 Peptide chain release factor 2 (.1) Lus10031411 [exp] 681 / 0 AT1G56350 660 / 0.0 Peptide chain release factor 2 (.1) Lus10036446 [exp] 253 / 9e-79 AT5G36170 651 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10041119 [exp] 245 / 1e-76 AT5G36170 627 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10009980 [exp] 167 / 2e-46 AT2G47020 603 / 0.0 Peptide chain release factor 1 (.1.2) Lus10038039 [exp] 165 / 9e-46 AT2G47020 600 / 0.0 Peptide chain release factor 1 (.1.2) Lus10005944 [exp] 139 / 4e-36 AT3G62910 644 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10029444 [exp] 130 / 8e-33 AT3G62910 632 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10008558 [exp] 59 / 2e-09 AT1G33330 267 / 2e-89 Class I peptide chain release factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0337 [poplar] [flax] RF PF00472 [poplar] [flax] RF-1 RF-1 domain CL0337 [poplar] [flax] PF03462 [poplar] [flax] PCRF PCRF domain
Representative CDS sequence Show only first row Show all	>Potri.013G009200.1 pacid=42811512 polypeptide=Potri.013G009200.1.p locus=Potri.013G009200 ID=Potri.013G009200.1.v4.1 annot-version=v4.1 ATGTCTTCTTTGATTGTTAAAAGGTCAAGCAGTAGATTTTCACATGTAGACTTTTCAAAGTTTCAAATTTTTTTATCTCTGAATCAAAATCACAAAGTTT TGGTTTCTGGGCTGCCTCCAGTTTTGATTAAAACCATAAAAAACCCATCTTGGTCTTATTTCAGTGTGTCAAGATACCACAATTTTGCACATTTGAGTGG AAAAGACAAGGTCTTGGCCTCTGGGTTTGGTGTCTTGAAGAGTTTGTTTAGTACACAGGCAGCAGCGGAGCTATCAACATCTGATGGGATAACTGTTGAT GGAATTGTGGCTAGCAATTGGACAATTCTTGATGAGAGTGAGAGTGATTGGAAGAGTCATGCTGCTGCTATTGCTCAGTCCATTCAAGTGATCAAAAGGC GCTTGCAGTGGAAGAAATTGATGGTTAGGTTGGATCTGCTATCAGTACAGCTGAATAAGCCTGATCTTTGGGACGATCCTGTACATGCTGGGAAAATAAG TCGAGAGCATGGTTCATTGATGGCTAAAATGAAGAAGGTGAGGACATTGGAACAAGAATTGCTGGAGCATATTGACATGATAAAACTGGCTCGTGAAGAG GATGATAATGAGTTGGAATCGGAAATGTTGAAAGCTTTGCTTCAAATGAGAAGAAATTCAAATGAGAAAGAGCAGGAAGCTTTGTTATCTGGGGAGCAGG ATTCCTGTCCTTGTTATATAGAGGTCCAAGCTGGAGCTGGTGGTACTGAGAGCATGGACTGGGCCAAAATGGTTATGCAAATGTATAAGTCGTGGGCGCA ACGTCATGGTTATGGAGTAACTGTGGTGGATGAGATGCCTGGTGAGATTGCAGGAATCAAGCGCGCAACAATCAAAGTTGATGGTGAATATGCATTTGGA TATGCCAAAGCAGAAGCTGGAGTGCACAGGTTGGTACGTATCTCACCATTTGACAGTGGAAAGCGCCGGCATACTTCATTTGCTGCTGTGGCTGTAATTC CAATCCTAAGGGATGGATTTACCCATGTCCCAATTAATGAATCTGATCTCCGTATCGAGAGGTTTCGTGCTGGGGGAGCTGGTGGTCAGCATGTTAACAC AACTGAGAGTGCTGTGAGAATAGTTCATATTCCAACAGGAATCACCGCCACTTGTCAAAATGAAAGATCTCAACATATGAACAAGGATTCAGCAATGGCA GTGCTCCAGTCTCGATTGGACCAACGTGAGATGGCTCGTCAGGCTCAGATGAATGCATATCATACACAATCTCTCACTGACATAGGTTGGGGCAACCAGA TTCGTTCTTATGTGCTCCACCCTTACCGCATGGTCAAAGACCTCCGAACTAATTATGAGGTCACTAACCCGGATTCTGTGCTCGAGGGAGAGATAGATGG CTTTATCTTGAGCTATTTATCAGCTTTGTTGGACAAGGACGAAGATTGCCGTAATCTAAGTGCATAA
AA sequence Show only first row Show all	>Potri.013G009200.1 pacid=42811512 polypeptide=Potri.013G009200.1.p locus=Potri.013G009200 ID=Potri.013G009200.1.v4.1 annot-version=v4.1 MSSLIVKRSSSRFSHVDFSKFQIFLSLNQNHKVLVSGLPPVLIKTIKNPSWSYFSVSRYHNFAHLSGKDKVLASGFGVLKSLFSTQAAAELSTSDGITVD GIVASNWTILDESESDWKSHAAAIAQSIQVIKRRLQWKKLMVRLDLLSVQLNKPDLWDDPVHAGKISREHGSLMAKMKKVRTLEQELLEHIDMIKLAREE DDNELESEMLKALLQMRRNSNEKEQEALLSGEQDSCPCYIEVQAGAGGTESMDWAKMVMQMYKSWAQRHGYGVTVVDEMPGEIAGIKRATIKVDGEYAFG YAKAEAGVHRLVRISPFDSGKRRHTSFAAVAVIPILRDGFTHVPINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGITATCQNERSQHMNKDSAMA VLQSRLDQREMARQAQMNAYHTQSLTDIGWGNQIRSYVLHPYRMVKDLRTNYEVTNPDSVLEGEIDGFILSYLSALLDKDEDCRNLSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56350			Peptide chain release factor 2...		Potri.013G009200 [exp]	0	1
AT1G43760			DNAse I-like superfamily prote...		Potri.002G000402 [exp]	4.35	0.8616
AT3G47930		ATGLDH	"L-galactono-1,4-lactone dehyd...		Potri.016G040300 [exp]	11.66	0.8180	Pt-ATGLDH.1
AT4G28200			unknown protein		Potri.007G040000 [exp]	12.48	0.8365
AT1G50840		PolIA, POLGAMMA...	polymerase I A, polymerase gam...		Potri.011G136900 [exp]	14.28	0.8406
AT4G19650			Mitochondrial transcription te...		Potri.012G118200 [exp]	14.69	0.8240
AT5G40410			Tetratricopeptide repeat (TPR)...		Potri.002G014800 [exp]	16.79	0.8424
AT5G13270		RARE1	REQUIRED FOR ACCD RNA EDITING ...		Potri.003G163701 [exp]	20.12	0.8377
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	23.04	0.8419
AT3G04750			Tetratricopeptide repeat (TPR)...		Potri.005G053600 [exp]	24.18	0.8201
AT2G21090			Pentatricopeptide repeat (PPR-...		Potri.004G171801 [exp]	25.61	0.8186

Compare expression of checked genes

Potri.013G009200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.