Plant FIBer expression Database

VP2.2 (Potri.013G009400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol VP2.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G15690 1237 / 0 FUGU5, AtVHP1;1, AVP-3, ATAVP3, AVP1 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
AT1G16780 441 / 6e-143 AtVHP2;2, AVPL1 Inorganic H pyrophosphatase family protein (.1)
AT1G78920 432 / 5e-140 AtVHP2;1, AVPL1, AVP2 vacuolar H+-pyrophosphatase 2, VACUOLAR-PYROPHOSPHATASE LIKE PROTEIN 1, vacuolar H+-pyrophosphatase 2, vacuolar H+-pyrophosphatase 2 (.1), vacuolar H+-pyrophosphatase 2 (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G018700
[exp]
1396 / 0 AT1G15690 1248 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Potri.006G063000
[exp]
1246 / 0 AT1G15690 1336 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Potri.018G119500
[exp]
1240 / 0 AT1G15690 1367 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Potri.010G254200
[exp]
445 / 3e-145 AT1G16780 1266 / 0.0 Inorganic H pyrophosphatase family protein (.1)
Potri.008G003502
[exp]
151 / 9e-41 AT1G16780 477 / 3e-164 Inorganic H pyrophosphatase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039977
[exp]
1245 / 0 AT1G15690 1381 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Lus10038111
[exp]
1238 / 0 AT1G15690 1385 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Lus10038114
[exp]
1098 / 0 AT1G15690 1170 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Lus10008828
[exp]
652 / 0 AT1G15690 697 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Lus10008044
[exp]
548 / 0 AT1G15690 561 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Lus10034800
[exp]
444 / 1e-144 AT1G16780 1434 / 0.0 Inorganic H pyrophosphatase family protein (.1)
Lus10008042
[exp]
414 / 1e-131 AT1G15690 422 / 1e-134 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Lus10033345
[exp]
349 / 4e-108 AT1G16780 1174 / 0.0 Inorganic H pyrophosphatase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03030 H_PPase Inorganic H+ pyrophosphatase
Representative CDS sequence
>Potri.013G009400.1 pacid=42811031 polypeptide=Potri.013G009400.1.p locus=Potri.013G009400 ID=Potri.013G009400.1.v4.1 annot-version=v4.1
ATGGGAATGTTGAGTGAAGGCCTCACACAGGTATTGATACCTGCTGCTGCTCTGGTTGGGATCGCTTTTGCTTTGCTTCAGTGGTATTTAGTGTCAAAGG
TGAAGGTTTCTGGTGATTCTAGTAATGGTTATAGTGGTAAGTTAATTGAAGAGGAAGAAGATGGTATTGATAGTCTTGAGGTTTCTATCAAGTGTGCTGA
AATCCAGAATGCCATTTCTGTTGGGGCAACCTCGTTCCTGTTTACTCAGTACAAGTACCTCAGTGTCTTCATGGTAGTTTTTGCTGCCATCATATTCTTC
TTCCTTGGTTCAGTTAAGGGATTCAGCACCAAAAGTGAACCTTGCACGTACAGCCAAGGGAAACTTTGTAAACCAGCTCTTGCCAACGCTGCCTTTAGCA
CACTTGCTTTCTTGCTTGGTGCTCTTACTTCTGTCCTCTCAGGCTTCTTAGGCATGAAGATCGCAACCTATGCCAACGCCAGGACAACTCTAGAAGCAAG
GAAGGGTGTAGGAAAGGCCTTTATTACAGCTTTTCGCTCAGGGGCAGTGATGGGTTTTCTTCTTGCTGCAAATGGCCTTTTGGTGCTCTATATCTCCATC
ATCTTATTCAAAATCTACTATGGAGATGACTGGGAAGGACTTTATGAGTCCATTACTGGTTATGGCCTTGGAGGTTCATCAATGGCACTCTTTGGAAGAG
TTGGAGGAGGTATATATACAAAAGCAGCTGATGTTGGGGCTGACCTTGTCGGAAAAGTTGAACGGAATATCCCTGAAGACGATCCAAGAAATCCAGCTGT
TATTGCTGATAATGTGGGTGACAATGTAGGAGACATTGCTGGGATGGGGTCTGACCTATTTGGATCTTATGCTGAAGCCTCCTGTGCAGCACTTTTTGTT
GCTTCAATATCATCCTTTGGTATTAGCCATGACTACACAGCCATGTCCTACCCGCTGATTATAAGCTCAGTTGGAATTGTGGTTTGCCTGATAACTACAC
TTTTTGCAACTGATCTCTCTGAGATCAGGGATGTAAGTCAAATTGAGCCATCATTGAAAAGGCAACTCGTTGTCTCAACGATTCTGATGACTGTTGGGAT
TGCCATGGTCAGCTTTTTCGCTTTGCCATCAGAATTCACTCTCTTCAATTTCGGAACCGAGAAGGCTGTCAAGAACTGGCACCTTTTCTTCTGTGTCACC
ATTGGCTTGTGGGCTGGACTTGTGATTGGATATACAACAGAGTATTACACTAGCAATGCCTACAGTCCCGTGCAGGATGTAGCAGATTCTTGCAGGACAG
GTGCTGCGACGAATGTGATTTTCGGGTTGGCTTTGGGATACAAATCTGTCATCGTTCCAATATTTGCCATTGCCATTGCTATCTATGTTAGCTTTAGCCT
GGCCGCCATGTATGGAATTGCTGTGGCTGCTTTGGGAATGCTCAGTACTATTGCCACTGGTCTTGCAATTGATGCTTATGGGCCCATAAGTGATAATGCT
GGTGGTATTGCAGAAATGGCTGGCATGAGTCATAAGATTCGTGAAAGAACGGATGCTCTAGATGCTGCTGGCAACACCACTGCTGCAATCGGCAAGGGTT
TTGCTATTGGATCAGCTGCTCTTGTTTCCCTTGCTTTGTTTGGTGCCTTTGTCAGCAGGGCTGGCATCAATACTGTCGACGTTTTAACCCCCAAGGTCTT
CATTGGGTTGATCGTTGGGGCTATGCTTCCATACTGGTTCTCTGCCATGACAATGAAGAGTGTGGGAAGTGCAGCACTCAAAATGGTCGAAGAGGTTCGT
CGACAGTTCAATACTATTCCAGGGCTTATGGAAGGTAGAGTCAAACCAGACTACGCAAACTGTGTCAAGATTTCAACTGATGCCTCTCTCAGGGAGATGA
TCCCACCTGGTGCTTTGGTTATGCTTACACCACTTATCACCGGAACCTTATTCGGAGTTGAAACTCTTGCTGGTGTTCTTGCTGGTTCACTTGTTTCTGG
TGTTCAGGTTGCCATTTCGGCCTCTAACACCGGAGGGGCATGGGATAATGCCAAGAAATACATAGAGGCTGGTGCATCGGAGCATGCAAAATCGTTGGGT
CCAAAGGGTTCAGATGCACACAAAGCTGCTGTCATTGGCGACACAATTGGAGATCCCCTCAAGGACACTTCAGGCCCATCACTTAACATCCTGATAAAGC
TGATGGCAGTTGAGTCACTAGTTTTTGCTCCATTCTTCGCCGCTCATGGAGGTTTGCTCTTCAAATTTCTCTAA
AA sequence
>Potri.013G009400.1 pacid=42811031 polypeptide=Potri.013G009400.1.p locus=Potri.013G009400 ID=Potri.013G009400.1.v4.1 annot-version=v4.1
MGMLSEGLTQVLIPAAALVGIAFALLQWYLVSKVKVSGDSSNGYSGKLIEEEEDGIDSLEVSIKCAEIQNAISVGATSFLFTQYKYLSVFMVVFAAIIFF
FLGSVKGFSTKSEPCTYSQGKLCKPALANAAFSTLAFLLGALTSVLSGFLGMKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLYISI
ILFKIYYGDDWEGLYESITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAEASCAALFV
ASISSFGISHDYTAMSYPLIISSVGIVVCLITTLFATDLSEIRDVSQIEPSLKRQLVVSTILMTVGIAMVSFFALPSEFTLFNFGTEKAVKNWHLFFCVT
IGLWAGLVIGYTTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIVPIFAIAIAIYVSFSLAAMYGIAVAALGMLSTIATGLAIDAYGPISDNA
GGIAEMAGMSHKIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAGINTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVR
RQFNTIPGLMEGRVKPDYANCVKISTDASLREMIPPGALVMLTPLITGTLFGVETLAGVLAGSLVSGVQVAISASNTGGAWDNAKKYIEAGASEHAKSLG
PKGSDAHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFAAHGGLLFKFL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G15690 FUGU5, AtVHP1;1... FUGU 5, ARABIDOPSIS THALIANA V... Potri.013G009400
[exp]
0 1 VP2.2
AT3G49950 GRAS GRAS family transcription fact... Potri.017G041500
[exp]
3.74 0.9524
AT4G22890 PGR5-LIKEA, PGR... PGR5-LIKE A (.1.2.3.4.5) Potri.003G119200
[exp]
4.47 0.9677
AT3G14690 CYP72A15 "cytochrome P450, family 72, s... Potri.011G098800
[exp]
8.12 0.9572
AT4G37470 alpha/beta-Hydrolases superfam... Potri.005G145000
[exp]
8.48 0.9570
AT4G21445 unknown protein Potri.004G033400
[exp]
9.05 0.9656
AT1G54780 AtTLP18.3, TLP1... thylakoid lumen protein 18.3, ... Potri.013G026400
[exp]
12.24 0.9614
AT5G55740 CRR21 chlororespiratory reduction 21... Potri.006G155400
[exp]
12.44 0.9581
AT4G26150 GATA GATA22, CGA1, G... GNC-LIKE, GATA TRANSCRIPTION F... Potri.006G229200
[exp]
13.60 0.9422
AT1G74590 ATGSTU10 glutathione S-transferase TAU ... Potri.008G135300
[exp]
14.28 0.9371
AT3G04870 SPC1, PDE181, Z... SPONTANEOUS CELL DEATH 1, PIGM... Potri.005G050700
[exp]
16.24 0.9392

Potri.013G009400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.