Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09210 577 / 0 AtCRT1b calreticulin 1b (.1) AT1G56340 574 / 0 AtCRT1a, CRT1 calreticulin 1a (.1.2) AT1G08450 417 / 2e-144 AtCRT3, PSL1, EBS2, CRT3 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) AT5G61790 187 / 1e-53 CNX1, ATCNX1 calnexin 1 (.1) AT5G07340 174 / 4e-49 Calreticulin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G015100 [exp] 609 / 0 AT1G56340 566 / 0.0 calreticulin 1a (.1.2) Potri.019G055200 [exp] 437 / 2e-152 AT1G08450 569 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.017G026300 [exp] 432 / 8e-150 AT1G08450 615 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.007G131500 [exp] 428 / 1e-148 AT1G08450 619 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.015G109200 [exp] 183 / 2e-52 AT5G61790 710 / 0.0 calnexin 1 (.1) Potri.012G111100 [exp] 177 / 5e-50 AT5G61790 677 / 0.0 calnexin 1 (.1) Potri.001G070600 [exp] 148 / 1e-39 AT5G61790 582 / 0.0 calnexin 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010924 [exp] 585 / 0 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10031409 [exp] 582 / 0 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10031410 [exp] 578 / 0 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10010923 [exp] 578 / 0 AT1G56340 616 / 0.0 calreticulin 1a (.1.2) Lus10020222 [exp] 424 / 1e-145 AT1G08450 586 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Lus10026849 [exp] 422 / 1e-143 AT1G08450 590 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Lus10043021 [exp] 193 / 5e-56 AT5G61790 793 / 0.0 calnexin 1 (.1) Lus10032521 [exp] 191 / 3e-55 AT5G61790 794 / 0.0 calnexin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00262 [poplar] [flax] Calreticulin Calreticulin family
Representative CDS sequence Show only first row Show all	>Potri.013G009500.2 pacid=42811314 polypeptide=Potri.013G009500.2.p locus=Potri.013G009500 ID=Potri.013G009500.2.v4.1 annot-version=v4.1 ATGGCAAACCCTAAAATCATCCCTCTGATTCTCTTCTCTCTCTTCGCGATCGCATCTGCTAAAGTCTTCTTCGAAGAACGATTCGAAGATGGATGGGAGA ATAGCTGGGTTGTATCTGATTGGAAGAAAGATGAGAACACTGCTGGGGTGTGGAACTACACTTCTGGAAAATGGAATGGAGACCCCAATGACAAAGGTAT CCAAACAAGTGAAGACTATAGGTTCTATGCTATTTCAGCTGAGTTCCCTAAATTCAGCAACAAGGATCAGACACTAGTCTTCCAATTCTCCGTCAAGCAT GAGCAAAAGCTTGACTGTGGTGGTGGGTACATGAAGTTGCTCAGTGGTGAAGTTGACCAGAAGAAATTTGGTGGTGATACCCCATACAGTATCATGTTTG GACCAGATATATGTGGATACAGCACCAAGAAAGTCCATGCCATTCTTAACTACAATGAAGCAAACCACTTGATCAAGAAGGAAGTTCCTTGTGAGACTGA CCAGCTCTCTCATGTCTACACATTGATCATCCGTCCTGATGCTACATATAGTATCCTTATTGACAATGTGGAGAAGCAAACCGGCAGTTTGTACTCTGAC TGGGATCTTCTCCCACCGAAGACAATCAAGGATCCTGAGGCCAAGAAACCAGAAGATTGGGATGACAAGGAGTATATTGCTGATCCCGAGGACAAGAAGC CAGAGGGTTATGATGACATTCTTAAAGAACTTCCAGATCCTGAAGCCAAAAAGCCCGAGGACTGGGATGATGAGGAAGATGGTGAGTGGACTGCCCCAAC CATTCCTAACCCTGAGTACAAGGGCCCATGGAAGCCAAAGAAAATTAAGAACCCCAACTACCAGGGCAAATGGAAGGCACCAATTATTGACAACCCAGAT TTCAAGGATGATCCAGAACTTTATGTTTACCCTGACTTGAGATATGTTGGCATTGAGTTGTGGCAGGTGAAATCTGGAACCTTGTTTGACAATGTCTTGG TCTCTGACGACCCCGAGTACGCAAAGCAGATGGCTGAAGAAACATGGGGAAAGCAGAAAGATGCTGAGAAGGCAGCATTCGAAGAGGTAGAGAAGAAAAG AGACGAGGAGGAATCCAAGGAAGATCCAGCTGACTCCGATGCTGAGGAGGAGGACGAGGCTGGTGATGCTGAAGGAGAGGATTCCGATGCCGAGACCAAA GCTGACACGGCTGACGATGAAGATGAAGTACATGATGAGTTGTGA
AA sequence Show only first row Show all	>Potri.013G009500.2 pacid=42811314 polypeptide=Potri.013G009500.2.p locus=Potri.013G009500 ID=Potri.013G009500.2.v4.1 annot-version=v4.1 MANPKIIPLILFSLFAIASAKVFFEERFEDGWENSWVVSDWKKDENTAGVWNYTSGKWNGDPNDKGIQTSEDYRFYAISAEFPKFSNKDQTLVFQFSVKH EQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILNYNEANHLIKKEVPCETDQLSHVYTLIIRPDATYSILIDNVEKQTGSLYSD WDLLPPKTIKDPEAKKPEDWDDKEYIADPEDKKPEGYDDILKELPDPEAKKPEDWDDEEDGEWTAPTIPNPEYKGPWKPKKIKNPNYQGKWKAPIIDNPD FKDDPELYVYPDLRYVGIELWQVKSGTLFDNVLVSDDPEYAKQMAEETWGKQKDAEKAAFEEVEKKRDEEESKEDPADSDAEEEDEAGDAEGEDSDAETK ADTADDEDEVHDEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09210		AtCRT1b	calreticulin 1b (.1)		Potri.013G009500 [exp]	0	1
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.006G063000 [exp]	1.00	0.9215	AVP.5
AT5G64570		ATBXL4, XYL4	ARABIDOPSIS THALIANA BETA-D-XY...		Potri.001G206800 [exp]	2.44	0.9005	XYL4.2
AT1G72480			Lung seven transmembrane recep...		Potri.003G068500 [exp]	4.24	0.8812
AT1G22760		PAB3	poly(A) binding protein 3 (.1)		Potri.005G198500 [exp]	4.89	0.8876
AT3G05520			Subunits of heterodimeric acti...		Potri.005G025300 [exp]	6.00	0.8869
AT3G16060			ATP binding microtubule motor ...		Potri.001G182300 [exp]	8.77	0.8712
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Potri.006G110500 [exp]	10.58	0.8581
AT2G42320			nucleolar protein gar2-related...		Potri.006G056800 [exp]	10.95	0.8536
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Potri.006G119000 [exp]	14.79	0.8163
AT2G26260		AT3BETAHSD/D2	3beta-hydroxysteroid-dehydroge...		Potri.006G218400 [exp]	15.19	0.8783

Compare expression of checked genes

Potri.013G009500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.