Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02080 308 / 3e-108 ASAR1, ATSARA1C, ATSAR2 secretion-associated RAS super family 2 (.1) AT3G62560 305 / 3e-107 Ras-related small GTP-binding family protein (.1) AT1G56330 304 / 8e-107 ATSAR1B, ATSAR1, SAR1, ATSARA1B ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS 1B, secretion-associated RAS 1B (.1) AT1G09180 286 / 7e-100 ATSARA1A, ATSAR1 SECRETION-ASSOCIATED RAS 1, secretion-associated RAS super family 1 (.1) AT1G02620 152 / 7e-48 Ras-related small GTP-binding family protein (.1) AT2G24765 65 / 3e-13 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT2G47170 62 / 3e-12 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT3G62290 62 / 3e-12 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT3G49870 62 / 4e-12 ATARLA1C ADP-ribosylation factor-like A1C (.1) AT1G23490 61 / 8e-12 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G019100 [exp] 312 / 4e-110 AT4G02080 357 / 1e-127 secretion-associated RAS super family 2 (.1) Potri.013G010000 [exp] 307 / 5e-108 AT4G02080 308 / 3e-108 secretion-associated RAS super family 2 (.1) Potri.005G015400 [exp] 305 / 4e-107 AT4G02080 299 / 7e-105 secretion-associated RAS super family 2 (.1) Potri.010G141900 [exp] 304 / 7e-107 AT4G02080 384 / 3e-138 secretion-associated RAS super family 2 (.1) Potri.008G107800 [exp] 301 / 9e-106 AT4G02080 338 / 4e-120 secretion-associated RAS super family 2 (.1) Potri.018G096077 [exp] 66 / 2e-13 AT2G24765 354 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G171500 [exp] 66 / 2e-13 AT2G24765 353 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G267800 [exp] 64 / 1e-12 AT2G24765 333 / 8e-119 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G013700 [exp] 63 / 1e-12 AT2G24765 336 / 6e-120 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010926 [exp] 311 / 3e-109 AT4G02080 385 / 9e-139 secretion-associated RAS super family 2 (.1) Lus10031408 [exp] 311 / 3e-109 AT4G02080 385 / 9e-139 secretion-associated RAS super family 2 (.1) Lus10037739 [exp] 306 / 1e-107 AT4G02080 389 / 2e-140 secretion-associated RAS super family 2 (.1) Lus10036456 [exp] 304 / 1e-106 AT4G02080 386 / 3e-139 secretion-associated RAS super family 2 (.1) Lus10016874 [exp] 300 / 7e-105 AT4G02080 383 / 7e-138 secretion-associated RAS super family 2 (.1) Lus10041127 [exp] 287 / 2e-99 AT4G02080 369 / 1e-131 secretion-associated RAS super family 2 (.1) Lus10031436 [exp] 62 / 5e-12 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10030884 [exp] 61 / 1e-11 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 61 / 2e-11 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10002817 [exp] 60 / 2e-11 AT2G15310 273 / 1e-94 ADP-ribosylation factor B1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00025 [poplar] [flax] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Potri.013G009900.2 pacid=42811645 polypeptide=Potri.013G009900.2.p locus=Potri.013G009900 ID=Potri.013G009900.2.v4.1 annot-version=v4.1 ATGTTTTTGGTTGATTGGTTTTATGGGGTGCTGGCATCACTTGGTTTGTGGCAAAAAGAAGCCAAGATCTTGTTCTTGGGCCTTGATAATTCTGGCAAAA CCACCTTGCTTCATATGTTAAAAGATGAGAGATTAGTGCAACACCAGCCTACACAGTATCCAACATCAGAGGAGTTGAGCATAGGGAAGATCAAGTTTAA GGCTTTTGATTTGGGCGGCCATCAGATTGCTCGTCGAGTTTGGAAAGATTACTATGCCAAGGTGGATGCAGTTGTTTACCTGGTAGATGCTTACGACAAA GAGAGGTTAGCTGAATCAAAGAAAGAACTAGATGCTCTCCTCTCTGATGAAGCATTAGCCAATGTCCCCTTCCTTGTTTTGGGCAACAAGATCGATATTC CATATGCTGCCTCAGAAGAAGAGTTGCGGTACCACCTTGGCCTTGTCAACTTCACCACCGGCAAGGGAAAGGTGAACTTGGGAGACTCAAATGTTCGTCC ACTCGAGGTCTTCATGTGTAGCATTGTCCGCAAGATGGGTTACGGAGAGGGTTTCAGGTGGCTTTCTCAGTACATCTAG
AA sequence Show only first row Show all	>Potri.013G009900.2 pacid=42811645 polypeptide=Potri.013G009900.2.p locus=Potri.013G009900 ID=Potri.013G009900.2.v4.1 annot-version=v4.1 MFLVDWFYGVLASLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK ERLAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLVNFTTGKGKVNLGDSNVRPLEVFMCSIVRKMGYGEGFRWLSQYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Potri.013G009900 [exp]	0	1
AT5G01650			Tautomerase/MIF superfamily pr...		Potri.006G104600 [exp]	6.24	0.7127
AT5G07960			unknown protein		Potri.012G065500 [exp]	9.21	0.6935
AT1G22540			Major facilitator superfamily ...		Potri.013G106600 [exp]	9.74	0.7614
AT4G35320			unknown protein		Potri.009G168800 [exp]	19.23	0.7351
AT5G19630			alpha/beta-Hydrolases superfam...		Potri.001G013700 [exp]	30.00	0.6020
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.011G055236 [exp]	30.85	0.7016
AT1G19310			RING/U-box superfamily protein...		Potri.014G040400 [exp]	32.55	0.6238
					Potri.013G126000 [exp]	38.49	0.6069
AT1G19360		RRA3	reduced residual arabinose 3, ...		Potri.002G134400 [exp]	40.98	0.6221
AT4G36195			Serine carboxypeptidase S28 fa...		Potri.007G015300 [exp]	42.81	0.6013

Compare expression of checked genes

Potri.013G009900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.