Plant FIBer expression Database

Potri.013G010300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G05760 247 / 7e-84 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010928
[exp]
270 / 7e-93 AT3G05760 281 / 2e-97 C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Lus10031406
[exp]
263 / 3e-90 AT3G05760 277 / 7e-96 C2H2 and C2HC zinc fingers superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0361 C2H2-zf PF12874 zf-met Zinc-finger of C2H2 type
Representative CDS sequence
>Potri.013G010300.1 pacid=42811654 polypeptide=Potri.013G010300.1.p locus=Potri.013G010300 ID=Potri.013G010300.1.v4.1 annot-version=v4.1
ATGGCAAATAACAATGCTGGTGGTAGTGTTGATAATACATTCAGAAGAAAATTCGATCCAGAAGAGTACTTAGAACGCGCTCGTGAGCGTGAAAAACAGG
AGGCCGAGGGTCGTGGGAAATCTAAATCGAAAGGGCCACCGGTGCAAAGGAAGCCCTTGAAGCATAGGGACTATGAAGTTGATCTCGACTCTCGGTTGGG
GAAAACTCAGGTTGTTACACCAATTGCACCTCTAAGTCAGCAGGCTGGATACTACTGTTCAGTTTGTGAGTGTGTGGTAAAGGATTCTGCAAACTACTTG
GATCACATCAATGGAAAGAAACACCAAAGAGCTTTGGGCATGTCTATGCGGGTGGAGCGTGCATCTCTTCAACAGGTCCAAGAGCGATTTGAAAAGCTCA
AGAAACGTAGAGAACCTGGAAGCTTCACAGAGCAAGATCTTGATGAACGGATCTTAAAACAGCAAGAAGAAGAGGAGGAACGCAAGCGTCAACGCCGAGA
AAGAAAGAAAGAGAAAAAGAAAGAGAAGGCAGCAGAGGAGGAAGAAGCTGATATTGATCCCGATATTGCAGCTATGATGGGGTTTGGCGGTTTCGGTTCA
AAAAAATAA
AA sequence
>Potri.013G010300.1 pacid=42811654 polypeptide=Potri.013G010300.1.p locus=Potri.013G010300 ID=Potri.013G010300.1.v4.1 annot-version=v4.1
MANNNAGGSVDNTFRRKFDPEEYLERAREREKQEAEGRGKSKSKGPPVQRKPLKHRDYEVDLDSRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYL
DHINGKKHQRALGMSMRVERASLQQVQERFEKLKKRREPGSFTEQDLDERILKQQEEEEERKRQRRERKKEKKKEKAAEEEEADIDPDIAAMMGFGGFGS
KK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G05760 C2H2ZnF C2H2 and C2HC zinc fingers sup... Potri.013G010300
[exp]
0 1
AT3G24100 Uncharacterised protein family... Potri.001G315400
[exp]
8.06 0.6912
AT1G03650 Acyl-CoA N-acyltransferases (N... Potri.013G134102
[exp]
8.83 0.6860
AT4G14145 unknown protein Potri.010G223700
[exp]
9.74 0.6737
AT1G03650 Acyl-CoA N-acyltransferases (N... Potri.013G134000
[exp]
19.18 0.6461
AT5G16060 Cytochrome c oxidase biogenesi... Potri.017G113401
[exp]
19.94 0.6904
AT1G55300 TAF7 TBP-associated factor 7 (.1.2) Potri.003G218700
[exp]
30.59 0.6320
AT5G27430 Signal peptidase subunit (.1) Potri.006G234600
[exp]
43.55 0.6500 SPP.3
AT2G33585 unknown protein Potri.005G257100
[exp]
44.12 0.5738
AT3G05810 unknown protein Potri.013G007600
[exp]
44.24 0.6372
AT1G75580 SAUR-like auxin-responsive pro... Potri.002G024300
[exp]
45.89 0.5872

Potri.013G010300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.