Plant FIBer expression Database

Potri.013G011000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G17360 451 / 2e-162 Ribosomal protein S4 (RPS4A) family protein (.1), Ribosomal protein S4 (RPS4A) family protein (.2)
AT5G07090 451 / 2e-162 Ribosomal protein S4 (RPS4A) family protein (.1), Ribosomal protein S4 (RPS4A) family protein (.2)
AT5G58420 450 / 3e-162 Ribosomal protein S4 (RPS4A) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G033700
[exp]
473 / 4e-171 AT5G07090 468 / 3e-169 Ribosomal protein S4 (RPS4A) family protein (.1), Ribosomal protein S4 (RPS4A) family protein (.2)
Potri.006G103700
[exp]
469 / 1e-169 AT5G58420 465 / 3e-168 Ribosomal protein S4 (RPS4A) family protein (.1)
Potri.016G124100
[exp]
469 / 1e-169 AT5G58420 458 / 2e-165 Ribosomal protein S4 (RPS4A) family protein (.1)
Potri.015G079600
[exp]
467 / 6e-169 AT5G07090 460 / 4e-166 Ribosomal protein S4 (RPS4A) family protein (.1), Ribosomal protein S4 (RPS4A) family protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004272
[exp]
438 / 2e-157 AT5G58420 499 / 0.0 Ribosomal protein S4 (RPS4A) family protein (.1)
Lus10019239
[exp]
439 / 7e-149 AT2G22660 747 / 0.0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0107 KOW PF00467 KOW KOW motif
CL0021 OB PF00900 Ribosomal_S4e Ribosomal family S4e
CL0492 S4 PF01479 S4 S4 domain
CL0492 PF08071 RS4NT RS4NT (NUC023) domain
CL0492 PF16121 40S_S4_C 40S ribosomal protein S4 C-terminus
Representative CDS sequence
>Potri.013G011000.1 pacid=42810912 polypeptide=Potri.013G011000.1.p locus=Potri.013G011000 ID=Potri.013G011000.1.v4.1 annot-version=v4.1
ATGGCTAGAGGGTTGAAGAAGCATTTGAAGAGGCTTAATGCCCCTAAACATTGGATGCTTGACAAACTTGGTGGTGCATTTGCACCCAAGCCATCATCTG
GACCCCACAAGTCTAGGGAATGCTTGCCTCTGATTCTTATTCTGCGTAACAGGCTGAAGTATGCTCTCACAGGCCGTGAAGTGCTTGCTATTTTGATGCA
GAGACATGTCCTTGTTGATGGCAAGGTCAGGACAGATAAAACTTACCCATCTGGTTTCATGGATGTTGTGTCAATCCCAAAGACAAATGAGAGCTTTCGT
CTCCTCTATGACACCAAAGGCCGCTTCAGGCTCCACTCCCTCAGAGATGATGAGGCCAAGTTTAAGCTTTGCAAAGTTCGGTCTGTTCAGTTTGGACAGA
AAGGAATCCCTTACCTGAACACTTATGATGGGCGCACCATCCGCTACCCAGATCCCCTCATTAAGGCCAATGACACCATCAAGCTGGACCTAGAGAACAA
CAAAATAGTTGATTTCATCAAGTTTGATGTGGGAAATGTTGTCATGGTCACTGGGGGAAGGAACAGAGGCCGAGTTGGAGTAATCAAGAACCGGGAGAAG
CACAAGGGAACTTTTGAGACAATCCATGTTCAAGATGCCACTGGCCATGAGTTTGCCACTCGCTTGGGCAATGTATTCACCATTGGAAAGGGCACCAAGC
CATGGATTTCTCTTCCCAAGGGCAAGGGTATTAAGTTGTCTATCATCGAGGAGGCTAAAAAAAGGCTTGCAGCATCCCAAGCTGCTGCCTGA
AA sequence
>Potri.013G011000.1 pacid=42810912 polypeptide=Potri.013G011000.1.p locus=Potri.013G011000 ID=Potri.013G011000.1.v4.1 annot-version=v4.1
MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTGREVLAILMQRHVLVDGKVRTDKTYPSGFMDVVSIPKTNESFR
LLYDTKGRFRLHSLRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLENNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREK
HKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWISLPKGKGIKLSIIEEAKKRLAASQAAA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G17360 Ribosomal protein S4 (RPS4A) f... Potri.013G011000
[exp]
0 1
AT5G28060 Ribosomal protein S24e family ... Potri.013G036100
[exp]
1.73 0.9092 Pt-RPS24.2
AT4G27090 Ribosomal protein L14 (.1) Potri.005G227300
[exp]
2.00 0.9144
AT3G10950 Zinc-binding ribosomal protein... Potri.002G140100
[exp]
2.23 0.9035
AT3G04770 RPSAB 40s ribosomal protein SA B (.1... Potri.015G112900
[exp]
2.64 0.9237 P40.4
AT5G65860 ankyrin repeat family protein ... Potri.014G019000
[exp]
4.47 0.8586
AT2G34480 Ribosomal protein L18ae/LX fam... Potri.011G072400
[exp]
5.09 0.8731 RPL18.5
AT3G05560 Ribosomal L22e protein family ... Potri.002G204100
[exp]
6.00 0.9084 RPL22.4
AT1G28395 unknown protein Potri.011G057300
[exp]
10.58 0.8677
AT2G47110 UBQ6 ubiquitin 6 (.1.2) Potri.014G115100
[exp]
14.00 0.8921 Pt-UBI.3
AT3G13580 Ribosomal protein L30/L7 famil... Potri.018G140300
[exp]
14.49 0.8931

Potri.013G011000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.