Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SYP41.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05710 456 / 2e-162 ATSYP43, SYP43 syntaxin of plants 43 (.1.2) AT5G26980 442 / 4e-157 ATSYP41, ATTLG2A, SYP41 syntaxin of plants 41 (.1.2) AT4G02195 369 / 2e-128 ATTLG2B, ATSYP42, SYP42 syntaxin of plants 42 (.1) AT5G46860 47 / 7e-06 SGR3, ATVAM3, ATSYP22, VAM3 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) AT5G16830 44 / 0.0001 ATSYP21, ATPEP12, SYP21, PEP12P syntaxin of plants 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G020800 [exp] 533 / 0 AT3G05710 462 / 1e-164 syntaxin of plants 43 (.1.2) Potri.002G200400 [exp] 395 / 1e-138 AT5G26980 397 / 1e-139 syntaxin of plants 41 (.1.2) Potri.001G138500 [exp] 47 / 9e-06 AT5G46860 377 / 3e-133 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.003G095300 [exp] 46 / 2e-05 AT5G46860 368 / 2e-129 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.014G145200 [exp] 43 / 0.0001 AT5G46860 263 / 4e-88 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029864 [exp] 473 / 9e-169 AT3G05710 510 / 0.0 syntaxin of plants 43 (.1.2) Lus10031466 [exp] 470 / 8e-168 AT3G05710 506 / 0.0 syntaxin of plants 43 (.1.2) Lus10020683 [exp] 365 / 3e-127 AT3G05710 361 / 7e-126 syntaxin of plants 43 (.1.2) Lus10015215 [exp] 201 / 1e-63 AT3G05710 223 / 3e-72 syntaxin of plants 43 (.1.2) Lus10000311 [exp] 50 / 2e-07 AT5G46860 217 / 5e-72 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10040094 [exp] 50 / 6e-07 AT5G46860 419 / 1e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10030953 [exp] 50 / 6e-07 AT5G46860 417 / 9e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10011064 [exp] 50 / 2e-06 AT1G45616 366 / 2e-111 receptor like protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [poplar] [flax] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Potri.013G011100.1 pacid=42812015 polypeptide=Potri.013G011100.1.p locus=Potri.013G011100 ID=Potri.013G011100.1.v4.1 annot-version=v4.1 ATGGCAACGAGGAATCGGACGTTGATATTTAGGAAGTACAGAGATGCATTAAAGAGCGTTAGGGTTCCGACGAGCTCATCTCCGTCGACGAGCTCTGTCG GAGGAGTTGGTGGTAGTGGTGGTGGTCCGGTGATCGAATTGGCCAGCACCTCGCTTCTCAATCCTAATCGGAAATATGCTCCTCTTAGTACTGAAGATCC CGGTAATTCAAGTAAAGGTGCATTTACAGTAGGTTTACCTCCAGCTTGGGTGGATGTATCTGAAGAAATAGCAGCAAATGTGCAACGTGCACGTATGAAA ATGGTTGAGTTAGCGAAGGCTCATGCCAAAGCTTTGATGCCTTCATTTGGTGATGGTAAAGAAGATCAACGGACAATTGAGGGTCTAACCCAAGAGATAA CTGGTCTTTTAAGGAAATCAGAGAAGCAACTAAAAAGACTTGCTGCAGCTGGGCCTTCCGAGGATTCAAATGTTAGAAAAAATGTGCAGCGTTCCCTTGC TACTGACCTTCAGAACCTTTCAATGGAACTTCGCAAGAAACAGTCGACATACTTGAAGCGCCTCAGGCAACAAAAAGAGGGTCAGGACGGGGATGATTTA GAAATGAACCTAAATGGTGGTAGATCTATAATAGATGATGACAATTTGGACGACATGGTATTTAATGAGCATCAGATGGCCAAGCTGAAAAAGAGTGAGG CATTCACTGTAGAAAGGGAAAGAGAGATCCAACAGGTAGTTGAATCAGTAAATGAGCTTGCTCAGATTATGAAGGACTTGTCAGTACTTGTGATAGACCA GGGCACTATTGTTGATAGAATAGACTACAACATTCAGAATGTAGCAACTACAGTTGAGGAGGGGCTTAAACAACTGCAGAAGGCTGAGAGAACACAGAAA CGAGGGGGAATGGTGATGTGTGCCACTGTGCTTGTTATAATGTGCGCTGTCATGCTGATCCTTCTCATCCTCAAGTCGATTCTCTTTTGA
AA sequence Show only first row Show all	>Potri.013G011100.1 pacid=42812015 polypeptide=Potri.013G011100.1.p locus=Potri.013G011100 ID=Potri.013G011100.1.v4.1 annot-version=v4.1 MATRNRTLIFRKYRDALKSVRVPTSSSPSTSSVGGVGGSGGGPVIELASTSLLNPNRKYAPLSTEDPGNSSKGAFTVGLPPAWVDVSEEIAANVQRARMK MVELAKAHAKALMPSFGDGKEDQRTIEGLTQEITGLLRKSEKQLKRLAAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGDDL EMNLNGGRSIIDDDNLDDMVFNEHQMAKLKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEEGLKQLQKAERTQK RGGMVMCATVLVIMCAVMLILLILKSILF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Potri.013G011100 [exp]	0	1	SYP41.2
AT1G50120			unknown protein		Potri.007G071000 [exp]	3.87	0.9380
AT4G30260			Integral membrane Yip1 family ...		Potri.006G169200 [exp]	7.48	0.9118
AT5G18520			Lung seven transmembrane recep...		Potri.016G081300 [exp]	8.24	0.9218
AT1G52360			Coatomer, beta' subunit (.1.2)		Potri.001G179200 [exp]	9.48	0.9202
AT5G12260			unknown protein		Potri.001G272400 [exp]	9.79	0.9125
AT3G51580			unknown protein		Potri.016G136900 [exp]	12.00	0.8822
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Potri.006G027100 [exp]	14.69	0.9202	Pt-POK.1
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Potri.006G104400 [exp]	16.88	0.9071
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Potri.006G214000 [exp]	18.76	0.9114
AT2G21410		VHA-A2	vacuolar proton ATPase A2 (.1)		Potri.002G028600 [exp]	21.16	0.9167

Compare expression of checked genes

Potri.013G011100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.