Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05670 417 / 5e-133 RING/U-box protein (.1) AT4G10940 60 / 6e-10 RING/U-box protein (.1) AT2G39100 50 / 3e-06 RING/U-box superfamily protein (.1) AT1G72200 46 / 8e-05 RING/U-box superfamily protein (.1) AT4G11680 46 / 0.0001 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G67180 45 / 0.0003 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) AT5G17600 44 / 0.0003 RING/U-box superfamily protein (.1) AT5G53910 44 / 0.0003 RING/U-box superfamily protein (.1) AT2G01735 44 / 0.0003 RIE1 RING-finger protein for embryogenesis (.1) AT2G26350 44 / 0.0004 PEX10, ATPEX10 peroxin 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G021000 [exp] 986 / 0 AT3G05670 436 / 2e-140 RING/U-box protein (.1) Potri.001G089900 [exp] 61 / 4e-09 AT4G10930 506 / 5e-160 unknown protein Potri.008G215200 [exp] 47 / 2e-05 AT2G39100 248 / 1e-81 RING/U-box superfamily protein (.1) Potri.004G106000 [exp] 47 / 4e-05 AT1G67180 237 / 3e-72 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) Potri.003G139900 [exp] 47 / 5e-05 AT5G53110 253 / 3e-81 RING/U-box superfamily protein (.1) Potri.001G091700 [exp] 45 / 0.0002 AT5G53110 223 / 1e-69 RING/U-box superfamily protein (.1) Potri.005G035600 [exp] 44 / 0.0003 AT3G05250 308 / 7e-106 RING/U-box superfamily protein (.1) Potri.006G222000 [exp] 44 / 0.0003 AT2G26350 519 / 0.0 peroxin 10 (.1) Potri.008G134900 [exp] 44 / 0.0003 AT1G68070 392 / 2e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015213 [exp] 409 / 4e-129 AT3G05670 368 / 2e-112 RING/U-box protein (.1) Lus10031468 [exp] 392 / 7e-127 AT3G05670 343 / 2e-107 RING/U-box protein (.1) Lus10000086 [exp] 194 / 8e-55 AT3G05670 162 / 9e-44 RING/U-box protein (.1) Lus10013501 [exp] 90 / 3e-18 AT3G05670 118 / 1e-27 RING/U-box protein (.1) Lus10007973 [exp] 60 / 1e-10 AT3G05670 51 / 2e-08 RING/U-box protein (.1) Lus10032402 [exp] 59 / 2e-08 AT4G10930 553 / 3e-179 unknown protein Lus10023068 [exp] 59 / 2e-08 AT4G10930 586 / 0.0 unknown protein Lus10001535 [exp] 56 / 9e-08 AT4G10940 189 / 4e-59 RING/U-box protein (.1) Lus10034165 [exp] 51 / 2e-06 AT2G39100 199 / 6e-62 RING/U-box superfamily protein (.1) Lus10034088 [exp] 46 / 0.0001 AT1G67180 250 / 2e-76 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.013G011400.8 pacid=42811813 polypeptide=Potri.013G011400.8.p locus=Potri.013G011400 ID=Potri.013G011400.8.v4.1 annot-version=v4.1 ATGGGAAGGGGAGAGCAAATCAATTATAAGAGGAATCTCAAGAAAAGGGTTAGGGATAAAGATAAGGGTTCCGATGATTCCGATGAGGATTACGTGGTTG AGAATGAGGAGAATTTATCAGATGATGATTCGGAGGATTGTCAAGTTTCTTTAGATGGGTATGCATCGGAGGAGTGTTTTGATAGTTTTGTTGAGGAAGA GGAGGGGGGAGAGGGCGAGGAGGAGGAAGAGTTTAGGAAGCCTGTTAGATCAAAGAAGAAAAGGAGTTCTTTAGGGAAGGGGAAAATTGAGGGTAAAGCT TCTCGGAAGAGAAAAAGGGTATCTCATAAGGATGAGGATGAGGAGGACGACGACGACGACGACGAGGAATATGTTAATGGTGACGGGGATGAAGATGATG AAGAATTCACACTAGATGAAGAAGATGATGATTGTTTGGATGAGGATGATGAATTGACAGCGGAAAGGAAGAACAGAAATGTGAAAGTGGTCAAGAGGAG AGTGCCAAAAGGGGGTTCTCGAAGAGTTACAAAAAGGAGGAGAAAATCTAGGGTTATGAAGAAGCCTTTGGCAAAGAAGGGGATAAATAAACGTAGGTTG AAAAGGAAAGAGAGGTGTGAATATGAAGATGAAGATGATGGTGATTTTTTAGCCGATAGCCCAGTTGCGAGAGAAAAGAGCAAGAAAACTTCAGGTGTGA GAAAGAGGAAATTTTCTGTGAATTCAGATTCGGATTTTGTGTCTAATGGATCATCTGATTATGAATATACCCTTTCTGAGGAAGAGAGAGAGCAAGTGAG GGAAGCCAGTCAGTTGTATGGAGAATTGAAGACTAGCTTGAGAAGTTCGTCAGTTGGGAAGAGAATTCAGGAGAATGGGGATTTATGCCAGCAGACAAAA CCAGTAGGAAGAAAAGGTAAGGAGAAGGTAAAGGAAGAAAAATCAGAGTTAGGAAAGCAGGTATGTGGAATTTGTCTTTCTGAAGAGGACAAAAGAAGAT TGAGGGGAACATTGGACTGCTGCAGTCACTATTTCTGTTTCACTTGCATCATGGAGTGGTCCAAAGTAGAATCTCGTTGCCCTTTGTGCAAGCAAAGATT TAGCACAATAGCTAAAAATGGAAGATCAGCAATGGGGGTTGATCTGAGAAATATGGTGATAGAAGTCCCCATGCGTGACCAGGTTTATCAACCAACTGAG GAAGAAATCAGGAGCTACATTGATCCATATGAGAATGTGATATGTAAAGAATGCCATGAAGGCGGGGATGATGGCCTCATGCTACTATGTGATCTCTGTG ATTCATCTGCGCATACCTACTGTGTCGGTTTGGGGCGGCAAGTACCCGAAGGCAATTGGTACTGTGATGATTGCAGGCCTGTTGCTCTTGGATCCACAAG TTCCCAAGCTCAAGATCCTTTGCCTGATCAATGGAATTCAAGCAACAACATATTTAATAGACCATCACCCATTTTGAATTTAGATGAAGGTTTAGATCCC AATCTAGAGTCTGCACCTCGTTTAACCATCCCACAAGTATCTGGGAGTCTATCGTCTCCCAGATTTCTGACTGGAGATATTCATGTAGCTTCACCAGTGT CTGTAGCAGGGGCATCTACTCTCTCTGGGAGACGTCATCTACACCGTCATATACGGACTCTCCTTTCAAATAGGAATCCATCAGCAAATATGAATCCTGT GGCTAATAGAATCGATGTCATCTCAGCTGCCAGCTTGCATAGTGATTTCTTAAACTCACAAATTGATCCAGTTAGGGAAACGGCTCTTCAAAATTTAAGG ACACAAGAAATTGGGACATCAGAACAGACACCCAACAAGGAGAGATTGCAGGCTAATGATCATCCCTCTTCTTCATTTCAAAATAGGGATTCTTATTATC TGACACCAAATCAATCGAGAAGGCAAACAGTTCAGGATCCAACTATTACAACTGCTGACAGACCTGTCAATTTGACTTTATGGCCTGATCTCATGGGGAT CAACTCAATACCTGGTTTTGAACAATCCCATCAGTTCAGAAGCAGATCAAGCACTGAGCCCGATGGTACTTTGTCCTCATACCAAGTGAGAGAACAAAGC CAGTTCTATGACGTGAAGGAACAATTGCAATCAATGGTAAAAAACCACTTGGGAAGCTTGTCACAAGATATTGAATTAGACCATGATACTTTCAAGGATA TAGCAAGGAGTTCTACACATACCATATTAGCTGCTTGCGGGCTAGAGCACAAGAGGAGTGAAGTTCATACAGTGCCCCTACCATCAACTTGTACACACAA TGATAGAGTGGTCGCTGGGCAGACAAGTGTGATGAGAGGTTGTTGCTCATCTTGTTTTGATTCTTTTGTAAGGAACGTAGTGAAGAGGATCATGGACACA AGACCGCGACAGTGGTTGACTTTAGGTCTTTAG
AA sequence Show only first row Show all	>Potri.013G011400.8 pacid=42811813 polypeptide=Potri.013G011400.8.p locus=Potri.013G011400 ID=Potri.013G011400.8.v4.1 annot-version=v4.1 MGRGEQINYKRNLKKRVRDKDKGSDDSDEDYVVENEENLSDDDSEDCQVSLDGYASEECFDSFVEEEEGGEGEEEEEFRKPVRSKKKRSSLGKGKIEGKA SRKRKRVSHKDEDEEDDDDDDEEYVNGDGDEDDEEFTLDEEDDDCLDEDDELTAERKNRNVKVVKRRVPKGGSRRVTKRRRKSRVMKKPLAKKGINKRRL KRKERCEYEDEDDGDFLADSPVAREKSKKTSGVRKRKFSVNSDSDFVSNGSSDYEYTLSEEEREQVREASQLYGELKTSLRSSSVGKRIQENGDLCQQTK PVGRKGKEKVKEEKSELGKQVCGICLSEEDKRRLRGTLDCCSHYFCFTCIMEWSKVESRCPLCKQRFSTIAKNGRSAMGVDLRNMVIEVPMRDQVYQPTE EEIRSYIDPYENVICKECHEGGDDGLMLLCDLCDSSAHTYCVGLGRQVPEGNWYCDDCRPVALGSTSSQAQDPLPDQWNSSNNIFNRPSPILNLDEGLDP NLESAPRLTIPQVSGSLSSPRFLTGDIHVASPVSVAGASTLSGRRHLHRHIRTLLSNRNPSANMNPVANRIDVISAASLHSDFLNSQIDPVRETALQNLR TQEIGTSEQTPNKERLQANDHPSSSFQNRDSYYLTPNQSRRQTVQDPTITTADRPVNLTLWPDLMGINSIPGFEQSHQFRSRSSTEPDGTLSSYQVREQS QFYDVKEQLQSMVKNHLGSLSQDIELDHDTFKDIARSSTHTILAACGLEHKRSEVHTVPLPSTCTHNDRVVAGQTSVMRGCCSSCFDSFVRNVVKRIMDT RPRQWLTLGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05670			RING/U-box protein (.1)		Potri.013G011400 [exp]	0	1
AT1G65280			DNAJ heat shock N-terminal dom...		Potri.019G083700 [exp]	2.00	0.9388
AT5G48610			unknown protein		Potri.017G058701 [exp]	2.82	0.9550
AT5G43490			unknown protein		Potri.017G058500 [exp]	3.74	0.9534
AT3G51650			unknown protein		Potri.006G107500 [exp]	4.00	0.9342
AT1G61730	GeBP		DNA-binding storekeeper protei...		Potri.005G075000 [exp]	4.24	0.9090
AT5G41020	MYB		myb family transcription facto...		Potri.015G095000 [exp]	5.47	0.9422
AT5G41020	MYB		myb family transcription facto...		Potri.003G168900 [exp]	5.91	0.9346
AT1G76810			eukaryotic translation initiat...		Potri.012G039200 [exp]	7.41	0.9360
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Potri.017G111400 [exp]	8.83	0.9172
AT4G33740			unknown protein		Potri.001G288800 [exp]	9.00	0.9282

Compare expression of checked genes

Potri.013G011400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.