Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27000 1082 / 0 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT2G47500 1079 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G09170 968 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G44730 719 / 0 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT3G10310 565 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G63640 529 / 6e-171 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT1G18410 522 / 2e-167 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G73860 514 / 9e-166 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G41310 507 / 1e-163 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT2G22610 357 / 2e-106 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G021100 [exp] 1810 / 0 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.002G201000 [exp] 1212 / 0 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.014G125700 [exp] 1208 / 0 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.001G467600 [exp] 771 / 0 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 769 / 0 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.001G104000 [exp] 550 / 1e-178 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 539 / 6e-174 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.015G047400 [exp] 524 / 4e-169 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.012G056700 [exp] 508 / 3e-163 AT1G63640 857 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029865 [exp] 1205 / 0 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10009851 [exp] 1097 / 0 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10015212 [exp] 1034 / 0 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10032897 [exp] 763 / 0 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10020682 [exp] 748 / 0 AT1G09170 843 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10001306 [exp] 684 / 0 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10018049 [exp] 621 / 0 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10042045 [exp] 620 / 0 AT3G10310 863 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10031058 [exp] 576 / 0 AT3G10310 880 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10035442 [exp] 569 / 0 AT3G10310 864 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.013G011500.1 pacid=42812033 polypeptide=Potri.013G011500.1.p locus=Potri.013G011500 ID=Potri.013G011500.1.v4.1 annot-version=v4.1 ATGGCAACAGAGCAGCAACAACAAGTTTGGCCTTTCTCTGCTGCTTCTGTTGTAGAGGATATGCTTCAAGAAAATATTGGAACTCGACCAAGAGGTGTTG ATTTGGTGGCTTCAAGAAAAGCTGAAGAAGCTTCCTTGAGAAGGTATGAAGCAGCTGGGTGGCTTCGAAAAACAGTGGGGGTTGTCGGGGGTAAAGATTT GCCAGCTGAGCCCTCTGAAGAAGAATTCAGGCTTGGATTGCGAAGTGGGATAATCTTATGTAACGTCCTTAACAAGGTTCAACCTGGAGCAGTTCCAAAG GTAGTGGAAGGTCCTGGTGATTCTGTTGAAGTTCCTGATGGGGCAGCTTTATCAGCATTTCAGTACTTCGAAAATGTGAGAAACTTCCTGGTAGCTATTG AGGAAATGGGAATTCCAACCTTTGAAGCCTCTGATTTGGAACAGGGAGGAAAATCTGCAAGGGTTGTGAACTGTATTTTAGCACTTAAATCATATAGTGA TTGGAAACAGAGTGGTGGGATTGGGACATGGAAATATGGAGGAAATTTGAAACCCTCAACCTCTGGGGGTGGGAAACCCTTCATGCGAAAAAATTCCGAG CCTTTCAAGAATTCCTTTTCTCGGGCATGCAGTGGTGATCCGTCTTCATTTGATGAACAATTCAATGACCTCAGTGAAGCTGGTGCCTCTCGTTCCTTGA ATATGCTTGTCCGTGCAGCTCTTTCAAACAGGAAGCAAGAAGAAATACCTAATATAGTAGAGTCTATGCTAAACAAAGTCATGGAGGAGTTTGAGCGTCG GTTGGTGAGCCAGAATGAGCAGATGAAAATAACAGCAAAAGATATGGAAGTAGCTAGCCCTGACATGCCTCTTTCAAGAACTTCAAGTGATACAAGGATG GAAGAAGAAACTTCCACACAAATCAATACACGGGAATGCTGCCATCATAAGGGCACTCCTCATGAGGAATCAGAAGACCAGCTTTTGAAACAGCAAGCGA TGGTTGAACGACAACAACAAGACATTAAGGAACTGAAACTTACTCTTTATGCTACGAAAGAAGGAATGCACCTTTTGCAAATGAAACATGTGGAGGAGTT CAACAATTTAGGTAAGCACTTGCATGGCCTAGCTCATGCAGCTTCAGGCTACCAGAGAGTCCTCGAGGAGAATCGCAAGTTATACAATCAAGTGCAGGAC CTGAAAGGAAATATTAGAGTATATTGCCGAGTAAGACCCTTTTTGACTGGGCAAGCAAGTCGTTTTAGTACGGTGGATCACATAGATGAAGGGAACATTA CAATTAGCACCCCTTCAAAATATGGCAAAGAGGGACGCAAATCATTCAACTTCAACAAGGTTTTTGGTCCTTTGGCAACTCAAGAGGAGGTATTTGCAGA CACCCAGCCTCTGATTCGTTCTGTTCTTGATGGTTACAACGTGTGTATATTTGCATATGGTCAAACTGGATCCGGAAAGACATTTACTATGACCGGTCCC AAGGAGCTCACAGAGGAAAGTCTAGGTGTAAACTACAGGGCTTTGAGCGATCTATTTCTCCTTTCAGATCAAAGAAAGGAAGTTATTTGCTATGATATCT CTGTCCAAATGCTTGAGATTTACAACGAGCAAGTGAGGGATCTCCTTGTAACTGAGGGTGTTAACAGAAGATTAGAAATTCGAAACAGTTCTCAGAATGG AATTAATGTACCAGATGCAAGTCTTGTAACTGTATCATCACCGTCTGATGTCTTAAATTTGATGAACATTGGGCACAGGAATCGTGCAGTTAGCGCTACA GCAATGAATGATCGCAGCAGTCGATCCCATAGCTGCCTGACAGTTCATGTTCAAGGGAGAGAGTTGGCATCTGGAACAGTAATCCGTGGTTCAATGCATC TAGTTGACCTGGCAGGAAGTGAACGGATTGACAAATCCGAGGTGACGGGAGATCGATTAAAGGAAGCACAGCATATCAATAAATCTCTTTCTGCTTTAGG AGATGTGATTGCCTCTCTTGCTCAAAAAAACTCACACGTTCCCTACCGGAACAGCAAACTCACGCAACTACTACAAGATTCACTTGGTGGGCAGGCTAAG ACGCTCATGTTTGTTCACATAAGTCCTGAGACTGATGCTCTTGGAGAAACAATTAGTACACTTAAATTTGCGGAAAGGGTTGCCACTGTTGAGCTTGGTG CTGCTCGAGTTAATAAAGATAGTTCAGAGGCGAAGGAGCTGAAAGAGCAGATTGCTAATCTCAAAGCAGCCTTAGCATCGAAGGAAGTAGAGTCAGAGCA CTCACATCATTCTCGATCCAGCACCCCGGAAAGACTTAAAATGAAGTCTGGTTTGCCTTCTCCTTCTCACAGTTGGCATAGTGCAGGTAGCATAACAAGT GCAGGTAGCATAACAAGCGGTCATAGGCAGATGGAGGATGGTAATTCAGAGGTTAGGAACAACTATTCGTCTGTTGCAAGAAGGCGAAGAAGCTTGGATC CCCAAGATTTGATAATGTATTCACCTCCATGGCTACCTGCTTCCAGTCCTTCGATGAGTGGAAAGGAGGATGATAGAGAATCAGTGTCTGGTGACTGGGT TGACAAGGTCATGGTGAACAGGCTTGACAGTGCAAATAGAGATGAAAATCCTGCAGGACAATGGGAAGTAGACAGCAGACAGTCGCCTGAGATGTTTTAT CAGAGTTATGCTCGAGACCCTTCGAAGATTTACCCAGAACAACCCTACAAATCTTCACCAAATACAAGGGACAGCCAAGAGTATGATGCTCAGAGGGGTA GGTTTGAAATGGCATCCACCGATGAGTCTGACGAACTCGAGGCTGCAACAAGTGATTCTTCTGAGCCAGACTTGCTATGGCAATCTAATATCCCTAGAAT GAGCAGCCTTCCCAATCCCAATGTTTTGGGATCTAAAACGAAGAAGACTACTAATCCTAGGGGATTCAAGAGCACAGAAACAAGGAGTTTAATTCCATCA CTAATTCCTTCACCATCAAGGAAACTACCAAATGGGGCGAGTCCAGGCCTAAACAAACCCGGAAGGCAGCTAGTTTCCGTCGACGGAAAGAGGAAAACTG GACATGCAAAGTGA
AA sequence Show only first row Show all	>Potri.013G011500.1 pacid=42812033 polypeptide=Potri.013G011500.1.p locus=Potri.013G011500 ID=Potri.013G011500.1.v4.1 annot-version=v4.1 MATEQQQQVWPFSAASVVEDMLQENIGTRPRGVDLVASRKAEEASLRRYEAAGWLRKTVGVVGGKDLPAEPSEEEFRLGLRSGIILCNVLNKVQPGAVPK VVEGPGDSVEVPDGAALSAFQYFENVRNFLVAIEEMGIPTFEASDLEQGGKSARVVNCILALKSYSDWKQSGGIGTWKYGGNLKPSTSGGGKPFMRKNSE PFKNSFSRACSGDPSSFDEQFNDLSEAGASRSLNMLVRAALSNRKQEEIPNIVESMLNKVMEEFERRLVSQNEQMKITAKDMEVASPDMPLSRTSSDTRM EEETSTQINTRECCHHKGTPHEESEDQLLKQQAMVERQQQDIKELKLTLYATKEGMHLLQMKHVEEFNNLGKHLHGLAHAASGYQRVLEENRKLYNQVQD LKGNIRVYCRVRPFLTGQASRFSTVDHIDEGNITISTPSKYGKEGRKSFNFNKVFGPLATQEEVFADTQPLIRSVLDGYNVCIFAYGQTGSGKTFTMTGP KELTEESLGVNYRALSDLFLLSDQRKEVICYDISVQMLEIYNEQVRDLLVTEGVNRRLEIRNSSQNGINVPDASLVTVSSPSDVLNLMNIGHRNRAVSAT AMNDRSSRSHSCLTVHVQGRELASGTVIRGSMHLVDLAGSERIDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNSHVPYRNSKLTQLLQDSLGGQAK TLMFVHISPETDALGETISTLKFAERVATVELGAARVNKDSSEAKELKEQIANLKAALASKEVESEHSHHSRSSTPERLKMKSGLPSPSHSWHSAGSITS AGSITSGHRQMEDGNSEVRNNYSSVARRRRSLDPQDLIMYSPPWLPASSPSMSGKEDDRESVSGDWVDKVMVNRLDSANRDENPAGQWEVDSRQSPEMFY QSYARDPSKIYPEQPYKSSPNTRDSQEYDAQRGRFEMASTDESDELEAATSDSSEPDLLWQSNIPRMSSLPNPNVLGSKTKKTTNPRGFKSTETRSLIPS LIPSPSRKLPNGASPGLNKPGRQLVSVDGKRKTGHAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Potri.013G011500 [exp]	0	1
AT3G45400			exostosin family protein (.1)		Potri.013G067400 [exp]	1.00	0.9609
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Potri.019G032500 [exp]	1.41	0.9578
AT4G02830			unknown protein		Potri.005G208800 [exp]	1.73	0.9506
AT4G18060			SH3 domain-containing protein ...		Potri.011G077500 [exp]	2.44	0.9425
AT3G56250			unknown protein		Potri.013G083700 [exp]	2.64	0.9338
AT3G11320			Nucleotide-sugar transporter f...		Potri.001G247600 [exp]	2.82	0.9480
AT4G33140			Haloacid dehalogenase-like hyd...		Potri.006G216500 [exp]	4.89	0.9312
AT3G55060			unknown protein		Potri.008G047200 [exp]	7.41	0.9433
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.009G087200 [exp]	7.74	0.9221
AT1G62040		ATG8C	autophagy 8c, Ubiquitin-like s...		Potri.004G013700 [exp]	8.71	0.8951

Compare expression of checked genes

Potri.013G011500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.