Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09160 604 / 0 Protein phosphatase 2C family protein (.1.2) AT1G68410 521 / 0 Protein phosphatase 2C family protein (.1.2) AT1G47380 474 / 4e-166 Protein phosphatase 2C family protein (.1) AT2G34740 98 / 1e-22 Protein phosphatase 2C family protein (.1.2) AT1G67820 98 / 7e-22 Protein phosphatase 2C family protein (.1) AT2G40180 91 / 1e-19 ATHPP2C5 phosphatase 2C5 (.1) AT1G07160 90 / 2e-19 Protein phosphatase 2C family protein (.1) AT5G10740 89 / 4e-19 Protein phosphatase 2C family protein (.1) AT1G34750 86 / 1e-18 Protein phosphatase 2C family protein (.1) AT4G26080 87 / 2e-18 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G021200 [exp] 744 / 0 AT1G09160 642 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G123600 [exp] 573 / 0 AT1G68410 679 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G121600 [exp] 558 / 0 AT1G68410 635 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.014G031200 [exp] 468 / 9e-164 AT1G47380 717 / 0.0 Protein phosphatase 2C family protein (.1) Potri.002G127300 [exp] 452 / 2e-157 AT1G47380 701 / 0.0 Protein phosphatase 2C family protein (.1) Potri.019G071600 [exp] 103 / 6e-24 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1) Potri.013G099400 [exp] 102 / 1e-23 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.012G002100 [exp] 93 / 1e-20 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.009G073000 [exp] 93 / 2e-20 AT2G30020 466 / 9e-164 Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020666 [exp] 672 / 0 AT1G09160 662 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10042659 [exp] 479 / 3e-168 AT1G47380 704 / 0.0 Protein phosphatase 2C family protein (.1) Lus10009763 [exp] 479 / 5e-168 AT1G47380 719 / 0.0 Protein phosphatase 2C family protein (.1) Lus10006485 [exp] 476 / 5e-167 AT1G47380 728 / 0.0 Protein phosphatase 2C family protein (.1) Lus10021737 [exp] 471 / 2e-164 AT1G47380 701 / 0.0 Protein phosphatase 2C family protein (.1) Lus10042275 [exp] 99 / 2e-22 AT1G07160 392 / 1e-135 Protein phosphatase 2C family protein (.1) Lus10026381 [exp] 92 / 3e-20 AT1G07160 390 / 4e-135 Protein phosphatase 2C family protein (.1) Lus10014926 [exp] 91 / 3e-20 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10006222 [exp] 91 / 1e-19 AT1G67820 382 / 6e-130 Protein phosphatase 2C family protein (.1) Lus10038455 [exp] 89 / 1e-19 AT2G34740 327 / 1e-112 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.013G011600.4 pacid=42811222 polypeptide=Potri.013G011600.4.p locus=Potri.013G011600 ID=Potri.013G011600.4.v4.1 annot-version=v4.1 ATGCTGGATCTGTTGAGACCTCTTCATGTTTCAACTGACAATATATCGAGGATGAGACCTCCTCTTGTTCCACTTGCGACATTGATTGGGCGTGAGCTTA GGAATGAGAAGATCGAGAAACCATTTGTGAAGTATGGACAAGCTGCTTTAGCAAAGAAAGGCGAGGATTACTTTCTCATAAAACCCGACTGCCAGAGGGT TCCTGGGGATCTGTCGACATCATTCTCTGTGTTTGCGCAGATCTTTGACGGACATAATGGGGTATCAGCCGCCATCTTTGTGAAGGAGAAGTTATTGGAT AATGTCTTGAGTGCAATTCCTCAAGATATCACTAGAGAAGAGTGGCTTCAAGCACTTCCTCAAGCACTAGTTGCTGGTTTTGTGAAAACTGACATAGAAT TCCAGCAGAAAGGGGAGACTTCTGGGACAACTGTGACATTTGTTGTAATTGATGAGTGGACTGTGACTGTTGCTTCTGTGGGGGATTCACGATGCATATT GGACAGCCAGGGGGGTGTGGTTTCTCTCTTGACAGTTGATCACAGGCTGGAAGAAAATGTTGAAGAGAGAGAGCGAGTAACTGCAAGTGGGGGTGAAGTA GGAAGGCTAAATGTTTTTGGAGGCAACGAGGTTGGTCCCTTGCGTTGTTGGCCTGGTGGATTATGTCTTTCTAGATCAATAGGTGACACGGATGTTGGAG AGTTCATTGTTCCAATACCTCATGTCAAGCAAGTGAAACTTTCAAATGCTGGAGGAAGACTTGTTATCGCTTCCGATGGTATCTGGGATGCTTTATCTTC TGATATGGCTGCCAAGTCATGTAGGGGTTTGCCTGCAGAGATTGCTGCAAAGTTGGTTGTTAAGGTGGCATTGAGGTCAAGGGGGCTGAAGGATGATACA ACATGCCTTGTTGTTGATATCATCCCATCCGACATACCTGTCTTGCCTCCAATACCGAGGAAGAAGCATAATATGTTCAGTTCGCTTTTTGGAAAGAAAG CGCTGAGTTCTGTGAGCAAATCAACAAAAAAGCTCTCTGCTGTTGGTGCGGTTGAGGAACTGTTTGAAGAGGGTTCTGCTATTCTTGCAGAACGATTAAG TAAGTATTTCCCTGCGAACGCAAACTCTGGGCTATGCAGATGTGCTGTTTGCCAAGTGGATCAAACCCCAGGTGACAGTTTATCAGTAAACTCAGGCTCT TTCTTCACACCTGGATCGAAGCCATGGGAAGGCCCCTTCCTCTGCAGTAACTGTCAGAAAAAGAAAGATGCCATGGAAGGCAAAAGGTCGAGCAGACCCA CTGTGATGACATAG
AA sequence Show only first row Show all	>Potri.013G011600.4 pacid=42811222 polypeptide=Potri.013G011600.4.p locus=Potri.013G011600 ID=Potri.013G011600.4.v4.1 annot-version=v4.1 MLDLLRPLHVSTDNISRMRPPLVPLATLIGRELRNEKIEKPFVKYGQAALAKKGEDYFLIKPDCQRVPGDLSTSFSVFAQIFDGHNGVSAAIFVKEKLLD NVLSAIPQDITREEWLQALPQALVAGFVKTDIEFQQKGETSGTTVTFVVIDEWTVTVASVGDSRCILDSQGGVVSLLTVDHRLEENVEERERVTASGGEV GRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEFIVPIPHVKQVKLSNAGGRLVIASDGIWDALSSDMAAKSCRGLPAEIAAKLVVKVALRSRGLKDDT TCLVVDIIPSDIPVLPPIPRKKHNMFSSLFGKKALSSVSKSTKKLSAVGAVEELFEEGSAILAERLSKYFPANANSGLCRCAVCQVDQTPGDSLSVNSGS FFTPGSKPWEGPFLCSNCQKKKDAMEGKRSSRPTVMT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09160			Protein phosphatase 2C family ...		Potri.013G011600 [exp]	0	1
AT2G18730		ATDGK3	diacylglycerol kinase 3 (.1)		Potri.018G096700 [exp]	2.00	0.8816
AT1G51540			Galactose oxidase/kelch repeat...		Potri.008G006200 [exp]	5.74	0.8634
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.001G292900 [exp]	6.32	0.8644
AT2G45260			Plant protein of unknown funct...		Potri.002G145900 [exp]	8.06	0.8391
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Potri.001G259200 [exp]	13.22	0.8516
AT3G50530		CRK	CDPK-related kinase (.1.2)		Potri.007G040800 [exp]	16.12	0.7695
AT1G47830			SNARE-like superfamily protein...		Potri.005G238701 [exp]	16.79	0.8482
AT1G51200			A20/AN1-like zinc finger famil...		Potri.006G056500 [exp]	17.23	0.8436
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.001G317400 [exp]	19.79	0.8473
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Potri.018G009400 [exp]	21.58	0.7416

Compare expression of checked genes

Potri.013G011600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.