Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02070 144 / 7e-40 Protein kinase family protein (.1) AT3G53840 125 / 2e-33 Protein kinase superfamily protein (.1) AT1G11915 52 / 8e-08 unknown protein AT5G50290 46 / 5e-06 unknown protein AT2G46850 42 / 0.0001 Protein kinase superfamily protein (.1) AT4G03230 40 / 0.0007 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G021300 [exp] 316 / 3e-111 AT5G02070 130 / 5e-35 Protein kinase family protein (.1) Potri.008G059900 [exp] 152 / 6e-43 AT5G02070 628 / 0.0 Protein kinase family protein (.1) Potri.006G118500 [exp] 127 / 3e-34 AT5G02070 577 / 0.0 Protein kinase family protein (.1) Potri.006G090200 [exp] 124 / 6e-33 AT5G02070 783 / 0.0 Protein kinase family protein (.1) Potri.008G095900 [exp] 65 / 1e-12 AT1G10380 158 / 2e-46 Putative membrane lipoprotein (.1) Potri.010G158500 [exp] 62 / 2e-11 AT1G10380 164 / 1e-48 Putative membrane lipoprotein (.1) Potri.013G150800 [exp] 61 / 9e-11 AT4G03230 1206 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G007900 [exp] 55 / 7e-09 AT1G11915 379 / 6e-132 unknown protein Potri.004G007400 [exp] 52 / 4e-08 AT1G11915 360 / 1e-124 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020667 [exp] 289 / 2e-100 AT5G02070 150 / 5e-42 Protein kinase family protein (.1) Lus10029876 [exp] 285 / 3e-89 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10014387 [exp] 139 / 3e-38 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10036906 [exp] 51 / 1e-07 AT1G10380 129 / 4e-36 Putative membrane lipoprotein (.1) Lus10037078 [exp] 49 / 7e-07 AT1G10380 170 / 6e-50 Putative membrane lipoprotein (.1) Lus10036687 [exp] 46 / 6e-06 AT1G10380 316 / 2e-108 Putative membrane lipoprotein (.1) Lus10037235 [exp] 44 / 2e-05 AT1G10380 318 / 5e-109 Putative membrane lipoprotein (.1) Lus10001236 [exp] 44 / 4e-05 AT5G50290 368 / 2e-128 unknown protein Lus10031592 [exp] 44 / 4e-05 AT4G03230 351 / 3e-107 S-locus lectin protein kinase family protein (.1) Lus10042105 [exp] 44 / 5e-05 AT5G50290 366 / 9e-128 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.013G011700.1 pacid=42812205 polypeptide=Potri.013G011700.1.p locus=Potri.013G011700 ID=Potri.013G011700.1.v4.1 annot-version=v4.1 ATGATGTTTCTGGTAGTCTTTTTGCTCACTTTACTATCTCATGTGCCAGCCCTTGATGCTTGCCCTAAATGTGGCAACATGCTAGTCCCTTACCCACTTA GCACAAGTGATAATTGTGGAAACCCTAGGTACAGAATCTACTGCAACAATGGTGCTCTAGAGTTCTTGTCAGCTCAAGGACTATACTACAGGATTCTCAG TATCAATCCTAGTGCTTATAAACTTGTCATACGCCCTCCCCTAATAGGGAAAGACACATGCTATTCCTCTGATCTTGCCGTAGGAGGATTAAGGCTTGAC GAGAACTTGCCATTCAACATATCCGTTCGCAACACTGTTATGTTATTCAACTGTTCTGATAACATTCTTCTGTCACCGTTGAATTGTTCGTCGACCAGCT ATTGTAGGCAGTACGAGGAGATAGAAGAGGGGAGTGGGTGCAAAGGAACTCTTTGCTGCCACTTCTTGAAAGACGCATCAATGACTTCGCATAGGATTAG GGTTAGGGTTGGAGGGTGCACAGCTTATACTTCTGTTGTGGACATCAAACCTGTGGATCCCGTTGATAAATGGAACTATGGAATTGAGCTGCAATGGATG CCTCCATACTAG
AA sequence Show only first row Show all	>Potri.013G011700.1 pacid=42812205 polypeptide=Potri.013G011700.1.p locus=Potri.013G011700 ID=Potri.013G011700.1.v4.1 annot-version=v4.1 MMFLVVFLLTLLSHVPALDACPKCGNMLVPYPLSTSDNCGNPRYRIYCNNGALEFLSAQGLYYRILSINPSAYKLVIRPPLIGKDTCYSSDLAVGGLRLD ENLPFNISVRNTVMLFNCSDNILLSPLNCSSTSYCRQYEEIEEGSGCKGTLCCHFLKDASMTSHRIRVRVGGCTAYTSVVDIKPVDPVDKWNYGIELQWM PPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02070			Protein kinase family protein ...		Potri.013G011700 [exp]	0	1
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Potri.003G202200 [exp]	1.00	0.9987
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Potri.012G082800 [exp]	3.74	0.9882
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Potri.015G101700 [exp]	4.89	0.9979
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Potri.001G060900 [exp]	7.14	0.9797
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G020367 [exp]	8.00	0.9804
AT5G03980			SGNH hydrolase-type esterase s...		Potri.005G025000 [exp]	10.39	0.9955
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Potri.005G232650 [exp]	10.95	0.9955
AT5G22470			NAD+ ADP-ribosyltransferases;N...		Potri.009G143900 [exp]	11.74	0.9638
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.010G085300 [exp]	12.00	0.9754
AT5G62550			unknown protein		Potri.016G129250 [exp]	12.00	0.9955

Compare expression of checked genes

Potri.013G011700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.