Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11060 279 / 2e-96 MTSSB mitochondrially targeted single-stranded DNA binding protein (.1) AT3G18580 102 / 1e-26 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G058800 [exp] 105 / 1e-27 AT3G18580 261 / 2e-88 Nucleic acid-binding, OB-fold-like protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031482 [exp] 297 / 1e-101 AT4G11060 277 / 4e-94 mitochondrially targeted single-stranded DNA binding protein (.1) Lus10015200 [exp] 216 / 3e-71 AT4G11060 202 / 2e-66 mitochondrially targeted single-stranded DNA binding protein (.1) Lus10027237 [exp] 98 / 6e-25 AT3G18580 278 / 1e-95 Nucleic acid-binding, OB-fold-like protein (.1) Lus10038946 [exp] 93 / 4e-23 AT3G18580 243 / 7e-82 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF00436 [poplar] [flax] SSB Single-strand binding protein family
Representative CDS sequence Show only first row Show all	>Potri.013G011800.1 pacid=42812065 polypeptide=Potri.013G011800.1.p locus=Potri.013G011800 ID=Potri.013G011800.1.v4.1 annot-version=v4.1 ATGAGTTCACTCGTTCTCAGATTTGCTAAGCTTTTAAGAGTCCCTTCTCCTGTTATCATGCCCACCTCTTCTCTAGGGGTAGGTTTGCAAAGAAGCTTGA GGTCTTGTTACTCAACTGTGTCATTTAACAGTGACAATGAAGAGGGGAAGAATGATAAAGTGGAAGAGGAGTTTGATGATTTGCTTGGCGATAGGCGCGA GTCACGGTTCCAAGGTGTGGATCCTAGAAAAGGATGGGAGTTTCGCGGTGTGCACAGGGCAATTATTTGTGGAAAAGTGGGACAAGCCCCTGTGCAGAAG ATCTTGCGAAATGGGAGGACTGTAACCATCTTTACTGTTGGAACAGGGGGCATGTTTGACCAAAGAATTATAGGATCAAAAGACTTGCCAAAACCTGCTC AGTGGCATCGAATAGCTGTGCATAATGATTCACTTGGGGCTTATGCTGTTCAACAACTTGCCAAAAACTCTTCAGTTTATGTTGAGGGAGACATTGAAAT TAGAGTTTACAATGACAGCATCAGTGGCGAAGTTAAAAACATTCCTGAGATTTGTGTTCGTCGTGATGGAAAGATTCGCCTTATAAGGAGTGGAGAAAAC ATCAGTAATATTTCCTTTGAGGATCTGAGAGAGGGATTGTTTAGCTGA
AA sequence Show only first row Show all	>Potri.013G011800.1 pacid=42812065 polypeptide=Potri.013G011800.1.p locus=Potri.013G011800 ID=Potri.013G011800.1.v4.1 annot-version=v4.1 MSSLVLRFAKLLRVPSPVIMPTSSLGVGLQRSLRSCYSTVSFNSDNEEGKNDKVEEEFDDLLGDRRESRFQGVDPRKGWEFRGVHRAIICGKVGQAPVQK ILRNGRTVTIFTVGTGGMFDQRIIGSKDLPKPAQWHRIAVHNDSLGAYAVQQLAKNSSVYVEGDIEIRVYNDSISGEVKNIPEICVRRDGKIRLIRSGEN ISNISFEDLREGLFS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11060		MTSSB	mitochondrially targeted singl...		Potri.013G011800 [exp]	0	1
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.004G029900 [exp]	1.41	0.8694
AT5G64650			Ribosomal protein L17 family p...		Potri.005G061700 [exp]	2.23	0.8367
AT5G47455			unknown protein		Potri.001G333800 [exp]	4.00	0.8465
AT2G19080			metaxin-related (.1)		Potri.006G077100 [exp]	4.47	0.8663
AT3G51010			unknown protein		Potri.007G018300 [exp]	7.93	0.8009
AT2G34050			unknown protein		Potri.004G052200 [exp]	8.66	0.8148
AT2G45860			unknown protein		Potri.002G158300 [exp]	9.53	0.8322
AT2G45060			Uncharacterised conserved prot...		Potri.014G058700 [exp]	10.95	0.7782
AT1G70190			Ribosomal protein L7/L12, olig...		Potri.003G074800 [exp]	14.28	0.8174
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Potri.015G062700 [exp]	14.28	0.7827

Compare expression of checked genes

Potri.013G011800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.