Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11420 1029 / 0 ATTIF3A1, ATEIF3A-1, TIF3A1, EIF3A eukaryotic translation initiation factor 3A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G021400 [exp] 1301 / 0 AT4G11420 1083 / 0.0 eukaryotic translation initiation factor 3A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031477 [exp] 1108 / 0 AT4G11420 1290 / 0.0 eukaryotic translation initiation factor 3A (.1) Lus10015204 [exp] 1108 / 0 AT4G11420 1284 / 0.0 eukaryotic translation initiation factor 3A (.1) Lus10015201 [exp] 777 / 0 AT4G11420 935 / 0.0 eukaryotic translation initiation factor 3A (.1) Lus10031481 [exp] 622 / 0 AT4G11420 691 / 0.0 eukaryotic translation initiation factor 3A (.1) Lus10015202 [exp] 295 / 7e-94 AT4G11420 313 / 2e-101 eukaryotic translation initiation factor 3A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01399 [poplar] [flax] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Potri.013G011900.2 pacid=42811017 polypeptide=Potri.013G011900.2.p locus=Potri.013G011900 ID=Potri.013G011900.2.v4.1 annot-version=v4.1 ATGTCGACTTTTGCGAAACCAGAGAATGCATTGAAGCGTGCTGAAGAGTTGATAAATGTTGGGCAGAAGCAAGATGCATTGCAAGCTCTTCATGATCTGA TCACTTCGAAGAGATACCGAGCCTGGCAAAAGCCACTGGAAAGGATTATGTTTAAGTATGTAGAGCTTTGTGTTGACTTGCGGAGGGGCAGGTTTGCCAA GGATGGTCTGATTCAGTATCGTATTGTTTGCCAACAAGTGAATGTCACTTCCTTGGAGGAGGTGATCAAGCATTTCATGCATCTGTCCACTGAGAAAGCT GAACAAGCTCGTAGTCAGTCACAAGCCCTTGAAGAAGCTCTTGATGTGGATGATCTGGAAGCAGATAAAAGGCCGGAAGATCTGATGCTTAGTTATGTCA GTGGTGAGAAGGGAAAGGATAGGTCTGATCGTGAACTTGTTACTCCTTGGTTCAAGTTTTTGTGGGAGACATATAGAACAGTACTTGAAATATTACGGAA CAACTCGAAGTTGGAGGCGCTATATGCAATGACAGCCCACCGAGCCTTCCAATTCTGTAAGCAATACAAACGGACAACAGAATTTAGGCGGTTGTGTGAG ATCATCAGGAATCATCTATCTAACCTTAACAAATATAGAGACCAAAGGGACCGACCTGATCTGTCAGCTCCAGAGAGCTTGCAGTTGTATCTTGATACAC GATTTGAGCAGCTAAAAGTAGCTACAGAGCTTGAACTGTGGCAGGAAGCTTTTCGGTCCATTGAAGATATTCACGGATTAATGTGCATGGTCAAAAAAAC TCCCAAGGCATCCTTGATGGTGGTTTATTATGCGAAGCTAACAGAGATTTTCTGGATTTCTTCAAGTCATCTTTACCATGCTTATGCATGGTTAAAGCTT TTCACACTTCAGAAAAGCTTCAATAAAAACCTAAGCCAGAAAGATTTGCAGATGATAGCATCATCTGTTGTTTTGGCTGCTTTGGCGGTGGCTCCTTATG ATCACACATATGGTGCATCTCATTTGGAACTTGAAAATGAGAAAGAGCGGAATTTGCGGATGGCTAATCTTATAGGTTTCAATCTAGACCTGAAACCTGA GAGTAGAGAAGTGCTTTCAAGATCATCCCTTCTTTCAGAACTGGTATCCAAAGGTGTAATGAGCTGTGTAACACAGGAAGTAAAGGATCTTTACCATCTT TTGGAGCACGAATTTCTACCTTTAGATCTCACGGCAAAGGTTCAGCCATTGTTATCCAAAATTTCTAAACTTGGGGGCAAACTCGGCTCAGCTTCTTCTT TGCCTGAAGTGCATCTCTCCCAATATGTTCCTGCCCTCGAGAAGCTTGTTACCCTGAGGTTGCTTCAACAGGTGTCTCAGGTGTATCAGATAATGAAAAT TGAGAGTTTGTCTCAGATGATCCCATTTTTTGATTTCTTTGCCGTGGAGAAGATTTCGGTTGATGCTGTGAAACATAATTTCATAGCTATGAAAGTTGAC CATATGAAGCATGTTGTATTGTTTGGCACTCCGGGTCTTGAATCTGATGATTTGCGAGATCATTTGACTGTTTTTGCTGAATCCTTAAATAAAGCAAGGG CTATGATTTATCCTCCAACAAAGAAATCATCGAAGCTGGGTGAGATTTTACCCGGACTAGGGGAGATTGTTGATAAGGAACACAAGAGACTTCTTGCTCG GAAATCTATTATTGAAAAGAGAAAGGAAGAACAAGAACGTCAACTTTTGGAAATGGAACGAGAGGAGGAGTCAAGGAGGCTGAAGCAGCTGAAGATTACA GAAGAGGCCGAGCAGAAGAGGCTTGCAACCGAGTATGAACAAAGGAACAAGCAAAGGATCCTCCGGGAAATTGAGGAGCGTGAGCTTGAAGAAGCGCAAG CTTTGCTTGAGGAACAAGAGAAGCGCAGTAAAAGGAAAGGAGGAAAGAAGCCCATCTTAGAAGGAGAGAAAGTGACAAAGCAAATTTTAATGGAAAGGGC TTTGAGTGAGCAACTCAGAGAGAGGCAGGAAATGGAGAAGAAATTACAGAAATTGGTGAAAACAATGGATTATTTGGAAAGGGCGAAAAGAGAGGAGGCA GCCCCATTGATTGAAGCTGCTTTTCAACAACGATTGGTGGAAGAGAAAGCACTTCATGAACATGAACAGCAGCTGGAGACTGAATTGAGCAGACAACGTC ATGATGGGGACCTCAAGGAGAAGTATAGGCTGTCTCGGATGTTGGAGAACAAGATCATATTTGAGGAAAGAGTGAAGAGCCGTCGAGAGGCAGAATTCAA CCAAAGGAGAGCCGACAGGGAAGAAAGGATCAACCAGATTATTCAAGCTCGGAAACAAGAGAGAGAAGCTTTGAGGAAGAAAATATTCTTTGTTAGGTCT GAAGAGGAGAGACTGAAAAAGCTGCGTGAAGAGGAAGAAGCTCGCAAACATGAAGAGGCTGAGAGACGCAGGAAAGAAGAAGCTGAACGCAAGGCGAAGT TGGATGAGATAGCAGAGAAGCAGAGACAAAGAGAACGTGAATTAGAAGAAAAGGAACGGGTAAGGAGGGAAACTCTCTTGGGAAGAGCAACTGATGGGCT TCATAGGCCTTCTGAGCTTCCTGCCGGTCCAGAGCCTGGGGCTGCTGCTGCAGCAGCAGCAGCTGCACCAGCCCCTGCAAAGTATGTGCCCAAGTTCCGG CGAGGTGGAACTGAAGGCTCAGCGCAGGCTCCTCCAGAAACTGATAAGTGGGGCGGTGGAAGCAGTAGGCCAGCCCCTCCAGATTCTGACAAGTGGGGCG GTGGAAGCAGTGGCGGTACCGGGCAGGCCACTTCAGATACAGACCGGTGGGGTGGTGGTGGTCGCTGGGGCAGTGGTGGTAGTAGACCTGATGATCGGAA TCCGCCCGGTGATAGGTGGGGTGGAGGTTCAAAGTCCACTTGGTCATCATCTAGGCCTCGTGGTCGCTGA
AA sequence Show only first row Show all	>Potri.013G011900.2 pacid=42811017 polypeptide=Potri.013G011900.2.p locus=Potri.013G011900 ID=Potri.013G011900.2.v4.1 annot-version=v4.1 MSTFAKPENALKRAEELINVGQKQDALQALHDLITSKRYRAWQKPLERIMFKYVELCVDLRRGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKA EQARSQSQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCE IIRNHLSNLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSIEDIHGLMCMVKKTPKASLMVVYYAKLTEIFWISSSHLYHAYAWLKL FTLQKSFNKNLSQKDLQMIASSVVLAALAVAPYDHTYGASHLELENEKERNLRMANLIGFNLDLKPESREVLSRSSLLSELVSKGVMSCVTQEVKDLYHL LEHEFLPLDLTAKVQPLLSKISKLGGKLGSASSLPEVHLSQYVPALEKLVTLRLLQQVSQVYQIMKIESLSQMIPFFDFFAVEKISVDAVKHNFIAMKVD HMKHVVLFGTPGLESDDLRDHLTVFAESLNKARAMIYPPTKKSSKLGEILPGLGEIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKQLKIT EEAEQKRLATEYEQRNKQRILREIEERELEEAQALLEEQEKRSKRKGGKKPILEGEKVTKQILMERALSEQLRERQEMEKKLQKLVKTMDYLERAKREEA APLIEAAFQQRLVEEKALHEHEQQLETELSRQRHDGDLKEKYRLSRMLENKIIFEERVKSRREAEFNQRRADREERINQIIQARKQEREALRKKIFFVRS EEERLKKLREEEEARKHEEAERRRKEEAERKAKLDEIAEKQRQRERELEEKERVRRETLLGRATDGLHRPSELPAGPEPGAAAAAAAAAPAPAKYVPKFR RGGTEGSAQAPPETDKWGGGSSRPAPPDSDKWGGGSSGGTGQATSDTDRWGGGGRWGSGGSRPDDRNPPGDRWGGGSKSTWSSSRPRGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Potri.013G011900 [exp]	0	1
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.001G004800 [exp]	2.00	0.8153
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Potri.016G041200 [exp]	3.16	0.8494	Pt-NAP57.1
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Potri.006G044100 [exp]	6.63	0.8054	Pt-NAP57.2
AT1G75335			unknown protein		Potri.019G095600 [exp]	10.00	0.8017
AT1G14710			hydroxyproline-rich glycoprote...		Potri.008G138900 [exp]	11.18	0.7409
AT4G32420			Cyclophilin-like peptidyl-prol...		Potri.018G030300 [exp]	11.48	0.7171
AT5G67240		SDN3	small RNA degrading nuclease 3...		Potri.007G048000 [exp]	11.66	0.7818
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.001G107300 [exp]	12.80	0.7207
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.004G169500 [exp]	12.96	0.7740
AT2G16650		PRORP2	proteinaceous RNase P 2 (.1)		Potri.009G145200 [exp]	14.83	0.7543

Compare expression of checked genes

Potri.013G011900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.