Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40650 346 / 5e-118 PRP38 family protein (.1) AT5G37370 54 / 5e-08 ATSRL1 PRP38 family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G021600 [exp] 213 / 5e-67 AT2G40650 180 / 2e-54 PRP38 family protein (.1) Potri.017G144121 [exp] 55 / 4e-08 AT5G37370 408 / 7e-141 PRP38 family protein (.1.2.3.4) Potri.004G075700 [exp] 49 / 2e-06 AT5G37370 411 / 4e-142 PRP38 family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015203 [exp] 327 / 5e-110 AT5G37370 52 / 3e-07 PRP38 family protein (.1.2.3.4) Lus10010963 [exp] 56 / 2e-08 AT5G37370 446 / 1e-156 PRP38 family protein (.1.2.3.4) Lus10031361 [exp] 56 / 2e-08 AT5G37370 394 / 2e-136 PRP38 family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03371 [poplar] [flax] PRP38 PRP38 family PF12871 [poplar] [flax] PRP38_assoc Pre-mRNA-splicing factor 38-associated hydrophilic C-term
Representative CDS sequence Show only first row Show all	>Potri.013G012000.1 pacid=42812626 polypeptide=Potri.013G012000.1.p locus=Potri.013G012000 ID=Potri.013G012000.1.v4.1 annot-version=v4.1 ATGGCGAATCGAACAGATCCAACAGCGAAGAACATAAGAGGGACAAACCCACAAAACCTAGTAGAGAAAATCCTGCGGTCCAAAATCTATCAACACACGT ACTGGAAAGAACAATGTTTTGGGTTAACTGCAGAGACTTTGGTCGATAAAGCGATGGAACTCGATCACTTAGGTGGTACCTACGGTGGAAATCGTAAGCC GACGCCGTTTATGTGTTTGGTCATGAAGATGTTGCAAATTCAACCTGAGAAAGATATTGTTGTTGAATTCATTAAAAACGAAGATTACAAATATGTGCGT GTGCTTGGTGCTTTTTATCTGCGACTTACTGGGACTGATATTGATGTGTATCGTTACCTAGAGCCTTTGTATAATGACTATCGAAAGTTGAGGAAAAAAC TAACTGATGGGAAATTCGCATTGACACACATGGATGAAGTTATCGACGAGCTCTTGACAAAAGATTATTCTTGTGACATTGCTATGCCCCGTATTAAGAA AAGATGGACTCTTGAAACACTTGCTGCACTTGAACCTAGAAAGAGTGTGTTGGAAGATGATTTTGAAGAAGAGGAAGAGCGAGAAGAGAATGAGCAACTT GAGGGATTAGACAATGGTGCTGATGAACGGGACTACTACCATGAGAGAAGTCCTGCAAGGGAAAGGGAAAGGGATCGGGATCGGGATAGGGATAGAAGAC GTGATAGTCACAGACATAGGGATCGTGACTATGATAGAGATTATGACAAAGACTATGATAGGGAGCGTGGACGTGGAAGAGAGAGAGACAGGGACAGAGA TAGGGATCGCTATCGTTTGAGAGATGAAAGAGATTATGGTCATGACCGGGAACGAGAAAGAGAAAGGGAAGGCAGGGAGCGTGAAAGACGAGATAGGGAC CGTGGCAGGCGGAGGAGTCATTCAAGGAGCCGAAGTAGGAGTCGGGATCGTAAAAGACATGCCCACAGCAGTAGTCCTAAAAGGCGCGGAGATGGAGCAG AAGAGCCGAAGAAGAAGAAGAAGAAGGAAAAGAAGGAAAGGAAAGATGATGGTACGGACCACCCTGATCCGGAGATTGCTGAAGCTAATAAGCTCCGAGC AGCCCTTGGGTTGAAACCACTTAAATGA
AA sequence Show only first row Show all	>Potri.013G012000.1 pacid=42812626 polypeptide=Potri.013G012000.1.p locus=Potri.013G012000 ID=Potri.013G012000.1.v4.1 annot-version=v4.1 MANRTDPTAKNIRGTNPQNLVEKILRSKIYQHTYWKEQCFGLTAETLVDKAMELDHLGGTYGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNEDYKYVR VLGAFYLRLTGTDIDVYRYLEPLYNDYRKLRKKLTDGKFALTHMDEVIDELLTKDYSCDIAMPRIKKRWTLETLAALEPRKSVLEDDFEEEEEREENEQL EGLDNGADERDYYHERSPARERERDRDRDRDRRRDSHRHRDRDYDRDYDKDYDRERGRGRERDRDRDRDRYRLRDERDYGHDREREREREGRERERRDRD RGRRRSHSRSRSRSRDRKRHAHSSSPKRRGDGAEEPKKKKKKEKKERKDDGTDHPDPEIAEANKLRAALGLKPLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40650			PRP38 family protein (.1)		Potri.013G012000 [exp]	0	1
AT2G44820			unknown protein		Potri.013G075500 [exp]	2.82	0.7956
AT2G25670			unknown protein		Potri.018G034800 [exp]	3.87	0.8171
AT5G53800			unknown protein		Potri.011G121000 [exp]	6.63	0.8048
AT5G38720			unknown protein		Potri.004G106900 [exp]	8.12	0.7960
AT1G06790			RNA polymerase Rpb7 N-terminal...		Potri.002G044500 [exp]	8.24	0.6994
AT4G32610			copper ion binding (.1)		Potri.006G246300 [exp]	10.48	0.7118
AT5G17900			microfibrillar-associated prot...		Potri.019G039900 [exp]	14.73	0.7698
AT5G38720			unknown protein		Potri.017G108700 [exp]	18.49	0.7419
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Potri.014G104500 [exp]	20.49	0.7300
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Potri.015G130900 [exp]	23.02	0.7395

Compare expression of checked genes

Potri.013G012000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.