Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27030 1698 / 0 TPR3 TOPLESS-related 3 (.1.2) AT3G16830 1605 / 0 TPR2 TOPLESS-related 2 (.1) AT1G80490 1353 / 0 TPR1 TOPLESS-related 1 (.1.2) AT1G15750 1347 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT3G15880 1335 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT2G25420 213 / 1e-57 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 60 / 4e-09 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 55 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 54 / 9e-07 TAF5 TBP-associated factor 5 (.1) AT5G23430 52 / 3e-06 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G021700 [exp] 2053 / 0 AT5G27030 1714 / 0.0 TOPLESS-related 3 (.1.2) Potri.013G081300 [exp] 1379 / 0 AT1G15750 1540 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.003G030000 [exp] 1377 / 0 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G128000 [exp] 1369 / 0 AT3G15880 1650 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.001G200500 [exp] 1363 / 0 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.006G066800 [exp] 1353 / 0 AT3G15880 1689 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.018G023800 [exp] 1039 / 0 AT1G80490 1195 / 0.0 TOPLESS-related 1 (.1.2) Potri.006G257900 [exp] 893 / 0 AT1G80490 1466 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G023900 [exp] 881 / 0 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029876 [exp] 1802 / 0 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10020668 [exp] 1795 / 0 AT5G27030 1717 / 0.0 TOPLESS-related 3 (.1.2) Lus10043258 [exp] 1391 / 0 AT3G15880 1776 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10011481 [exp] 1362 / 0 AT1G15750 2011 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10023119 [exp] 1357 / 0 AT1G15750 1959 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10038094 [exp] 1154 / 0 AT1G80490 1525 / 0.0 TOPLESS-related 1 (.1.2) Lus10019401 [exp] 842 / 0 AT1G15750 1596 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10006650 [exp] 799 / 0 AT1G15750 1593 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10011905 [exp] 757 / 0 AT3G15880 920 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10001951 [exp] 633 / 0 AT1G15750 1007 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.013G012100.1 pacid=42812683 polypeptide=Potri.013G012100.1.p locus=Potri.013G012100 ID=Potri.013G012100.1.v4.1 annot-version=v4.1 ATGTCGTCTTTGAGTAGAGAATTGGTGTTTCTCATACTTCAGTTTCTCGAAGAAGAAAAATTTAAAGAGTCTGTCCATAAGCTTGAGAAGGAATCTGGTT TTTATTTCAACATGAAGTACTTTGAGGAGAAAGTGCTGGCTGGAGAATGGGATGAAGTTGAAAAGTACTTAGCGGGGTTTACCAAAGTCGATGATAACAG ATACTCAATGAAGATATTTTTTGAAATCAGGAAGCAGAAGTATCTAGAAGCGCTTGATCGGCAAGACAAGGCGAAGGCGGTTGAAATTTTAGTGGGTGAT TTGAAGGTGTTCTTGACATTTAATGAGGAACTGTACAAAGAAATCACTCAGCTTTTAACTCTTAACAATTTCAGGGAAAATGAGCAGCTGTCCAAGTATG GTGACACTAAAACAGCTCGTAGCATCATGTTGGTAGAGCTAAAAAAGCTAATTGAAGCAAATCCTCTCTTTCGTGATAAGCTTGCATTTCCGACCTTGAA GTCATCTCGATTGAGGACTCTAATTAATCAGAGTTTGAACTGGCAGCACCAATTATGCAAGCATCCAAGGTCGAACCCAGACATCAAGACTTTGTTCATA GACCACACATGCTCACCTACAAATGGTCCTCTTGCTCCTGCACCTGTCAGTCTTCCTGTTGCTGCTGTTGCAAAGCCTGCTCCTTATACATCTCTTGGGG CTCATGGTCCCTTTCCAGCTACTGGTGCAGCAGCTAATGCCGGTGCCTTAGCTGGTTGGATGGCAAATGCTTCTGCTTCTTCATCCGTTCAAGCAGCTGT TGTTACTGCATCATCAATTCCTATTCCTCAAAATCAAGTTTCAGTCTTGAAACGTCAAAGAACACCGCCAACTGCCCCGGGTATTGTTGATTATCAGAAT CCTGATCATGAACTAATGAAACGTCTCCGGCCTGCCCAATCTGTTGAAGAGGCTACATATCCAGCATCTAGACAACAGGCATCTTGGTCTCTGGAAGACC TGCCAAGGACAGTAGCTTTTGCCCTGCATCAAGGGTCAACTGTCATGAGCATGGATTTTCATCCTTCTCACCACACATTGCTTCTTGTTGGTTCTGTTAA TGGTGAAATTACACTTTGGGAACTCATCTCACGGGAGAGACTGTTTTCAAAGCCCTTCAAGATTTGGGACTTGCAAGGTTGTTCATTGCAATTTCAGGCT TCTGGTTTCAAAGATGCATCAATTTCTGTCACCCGTGTTGCATGGAGTCCCGATGGAAATTTTGTGGGGGCTGCATTTAATAAACACTTGATTCACTTGT ATGCATATAATGGACCAAATGATCTGCGCCAACATTTAGAGATTGATGCCCATGTTGGTGGTGTTAATGATTTGGCTTTTGCTCATCCAAACAAACAACT TTGTGTGGTCACCTGTGGAGATGACAAGCTAATAAAGGTGTGGGATTTGACGGGACGGAAGCTGTTTAATTTTGAAGGTCACGAAGCAGCAGTTTATAAT ATCTGTCCACACCACAAAGAGAACATCCAGTTCATATTCTCAACTGCTATTGATGGGAAAATAAAAGCCTGGCTATATGACAATATAGGATCTAGAGTTG ATTATGATGCTCCTGGTCACTGGTGTACTACGATGCTTTACAGTGCTGATGGTAGTAGGTTGTTCTCTTGTGGAACAAGTAAAGAAGGGGACTCTTATCT AGTTGAATGGAATGAAAGTGAAGGATCGGTAAAGAGGAGTTTTCTTGGGTTTAGAAAGAAATCAGCTGGTGTTGTGCAGTTTGACACTACCCAAAACCAC TTTTTGGCTGCTGGTGATGATGGTCAGATAAAGTTTTGGGATATGGAGAATATCAGTTTCATCACAACCACGGATGCAGATGGGGGACTACAGACTCTTC CTCGCCTGAAATTCAACAAGGAAGGGAATCTTCTTGCTGTTACCACTGCAGACAATGGATTCAAGATACTTGCAAACGCTGCTGGTCTCAGATCATTGAG AGCAGTTGAGACTCATTCTTTTGAAGCATTGAGATCACCTATGGAATCTGCTGCAATCAAGGTTTCTGGCACTTCTAATATAGTAAATGCCAGTCCAGTG AACCTTAAAGTGGAAAGGAGCTCTCCTGTCAGGCCTTCTCCTATTCTTAATGGAGTTGATCCAATGAATAGAAGCATGGAAAAGCCAAGAACTGTGGATG ATGTAATTGATAAAACAAAACCCTGGCAATTGGCTGAAATTGTAGATCCTGGCGAGTGTCGATTAGTTACCTTGCCTGATAGCACGGATACATCAAGCAA GGTTGTTCGTCTTCTGTATACAAATTCTGGTGTTGGCATGTTAGCACTAGGAGCAAATGGTATTCAGAAGCTTTGGAAGTGGCCACGCAATGAACAAAAT CCAAGTGGAAAGGCCACTGCCAATGTCGTTCCACAGCATTGGCAACCAAACAGTGGTCTTCTTATGACTAATGATGTCTCAGGTGTCAACCTTGAAGAAG CAGTTCCGTGCATAGCTCTCTCAAAGAATGACTCATATGTAATGTCAGCCACTGGTGGGAAGGTTTCACTGTTCAACATGATGACATTTAAGGTGATGAC AACATTCATGTCTCCTCCCCCTGCTTCAACCTTCCTAGCATTCCATCCCCAGGATAACAATATCATAGCCATTGGAATGGAGGATTCAACTATTCACATA TACAATGTCAGAGTGGATGAGGTAAAATCAAAATTAAAGGGTCATCAGAAGCGAGTAACTGGTTTAGCCTTTTCCACCAATCTTAATATCTTGGTTTCAT CAGGTGCTGATGCTCAGCTTTGCATCTGGAGCATTGATACATGGGAGAAAAGAAAATCAGTTGCAATTCAAATTCCAACAGGAAAGTCACCTACCGGTGA CACCCGTGTTCAGTTCCACTCTGATCAGACTCGTTTGCTCGTGGTTCATGAGACCCAGTTAGCAATATATGATGCCTCCAAGATGGAGCGTATCCATCAG TGGGTACCACAAGATGCCATTTCTGCACCCATATCTTATGCAGCCTACTCTTGCAACAGTCAATTAATTTACGCTACATTCAGTGATGGTAACGTTGGAG TGTTTGACGCCGATCACCTGAGACTTAGATGCCGAATTGCTCCCTCGGCATATAACGGGAGTCAAACTGCTCACCCACTAGTTGTTGCTACTCATCCACT CGATCCCAACCAGCTAGCTGTTGGGTTGACCGATGGGTCTGTTAAAGTTATAGAACCCACAGAATCAGAAAAGAAGTGGGGAACAAGTCCGCCTGTAGAT AACGGGGTGCTAAATGGTCGGACAACATCATCATCCACTACAAGCAACCACACACCAGATCAACTGCAAAGATGA
AA sequence Show only first row Show all	>Potri.013G012100.1 pacid=42812683 polypeptide=Potri.013G012100.1.p locus=Potri.013G012100 ID=Potri.013G012100.1.v4.1 annot-version=v4.1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFYFNMKYFEEKVLAGEWDEVEKYLAGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGD LKVFLTFNEELYKEITQLLTLNNFRENEQLSKYGDTKTARSIMLVELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLNWQHQLCKHPRSNPDIKTLFI DHTCSPTNGPLAPAPVSLPVAAVAKPAPYTSLGAHGPFPATGAAANAGALAGWMANASASSSVQAAVVTASSIPIPQNQVSVLKRQRTPPTAPGIVDYQN PDHELMKRLRPAQSVEEATYPASRQQASWSLEDLPRTVAFALHQGSTVMSMDFHPSHHTLLLVGSVNGEITLWELISRERLFSKPFKIWDLQGCSLQFQA SGFKDASISVTRVAWSPDGNFVGAAFNKHLIHLYAYNGPNDLRQHLEIDAHVGGVNDLAFAHPNKQLCVVTCGDDKLIKVWDLTGRKLFNFEGHEAAVYN ICPHHKENIQFIFSTAIDGKIKAWLYDNIGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKEGDSYLVEWNESEGSVKRSFLGFRKKSAGVVQFDTTQNH FLAAGDDGQIKFWDMENISFITTTDADGGLQTLPRLKFNKEGNLLAVTTADNGFKILANAAGLRSLRAVETHSFEALRSPMESAAIKVSGTSNIVNASPV NLKVERSSPVRPSPILNGVDPMNRSMEKPRTVDDVIDKTKPWQLAEIVDPGECRLVTLPDSTDTSSKVVRLLYTNSGVGMLALGANGIQKLWKWPRNEQN PSGKATANVVPQHWQPNSGLLMTNDVSGVNLEEAVPCIALSKNDSYVMSATGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIHI YNVRVDEVKSKLKGHQKRVTGLAFSTNLNILVSSGADAQLCIWSIDTWEKRKSVAIQIPTGKSPTGDTRVQFHSDQTRLLVVHETQLAIYDASKMERIHQ WVPQDAISAPISYAAYSCNSQLIYATFSDGNVGVFDADHLRLRCRIAPSAYNGSQTAHPLVVATHPLDPNQLAVGLTDGSVKVIEPTESEKKWGTSPPVD NGVLNGRTTSSSTTSNHTPDQLQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Potri.013G012100 [exp]	0	1
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.016G012900 [exp]	6.63	0.7743
AT1G15890			Disease resistance protein (CC...		Potri.011G124432 [exp]	14.96	0.7333
AT5G53770			Nucleotidyltransferase family ...		Potri.001G400800 [exp]	17.66	0.7475
AT1G73460			Protein kinase superfamily pro...		Potri.012G039700 [exp]	21.33	0.7398
AT4G27220			NB-ARC domain-containing disea...		Potri.011G124100 [exp]	25.29	0.7439
AT3G06190		ATBPM2	BTB-POZ and MATH domain 2 (.1....		Potri.008G200700 [exp]	27.38	0.7253
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Potri.001G044700 [exp]	29.51	0.7296
AT1G17780			unknown protein		Potri.001G376800 [exp]	43.95	0.7305
AT4G13630			Protein of unknown function, D...		Potri.002G242900 [exp]	50.11	0.7161
					Potri.003G027318 [exp]	65.42	0.7103

Compare expression of checked genes

Potri.013G012100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.