Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27930 556 / 0 Protein phosphatase 2C family protein (.1.2) AT3G05640 536 / 0 Protein phosphatase 2C family protein (.1.2) AT3G16800 385 / 2e-133 Protein phosphatase 2C family protein (.1.2.3) AT1G79630 320 / 8e-106 Protein phosphatase 2C family protein (.1.2.3) AT5G36250 311 / 4e-103 Protein phosphatase 2C family protein (.1) AT3G02750 311 / 2e-102 Protein phosphatase 2C family protein (.1.2.3) AT1G16220 306 / 2e-100 Protein phosphatase 2C family protein (.1) AT4G03415 292 / 1e-95 Protein phosphatase 2C family protein (.1.2) AT1G03590 291 / 5e-95 Protein phosphatase 2C family protein (.1) AT5G01700 264 / 1e-85 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G021900 [exp] 660 / 0 AT5G27930 571 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G006200 [exp] 485 / 1e-172 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2) Potri.010G006100 [exp] 473 / 1e-167 AT3G05640 451 / 2e-159 Protein phosphatase 2C family protein (.1.2) Potri.019G054200 [exp] 345 / 6e-116 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G085500 [exp] 329 / 9e-110 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.001G473300 [exp] 316 / 3e-104 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.019G103100 [exp] 312 / 4e-103 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 310 / 3e-102 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G066200 [exp] 310 / 8e-102 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029874 [exp] 536 / 0 AT5G27930 514 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10015206 [exp] 457 / 2e-161 AT5G27930 451 / 4e-159 Protein phosphatase 2C family protein (.1.2) Lus10031475 [exp] 456 / 3e-161 AT5G27930 456 / 3e-161 Protein phosphatase 2C family protein (.1.2) Lus10016831 [exp] 449 / 7e-158 AT3G05640 459 / 2e-162 Protein phosphatase 2C family protein (.1.2) Lus10037709 [exp] 446 / 1e-156 AT3G05640 462 / 2e-163 Protein phosphatase 2C family protein (.1.2) Lus10000402 [exp] 318 / 5e-105 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10022588 [exp] 313 / 3e-104 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10027122 [exp] 315 / 1e-103 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1) Lus10020671 [exp] 295 / 4e-100 AT3G05640 283 / 8e-96 Protein phosphatase 2C family protein (.1.2) Lus10018570 [exp] 303 / 3e-99 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.013G012200.2 pacid=42812214 polypeptide=Potri.013G012200.2.p locus=Potri.013G012200 ID=Potri.013G012200.2.v4.1 annot-version=v4.1 ATGGGGCATTTTTCATCAATGTTCAATGGATTGGCAAAGTCATTTACAATAAGAAAAGTGAAGAGTAATGGGAATGGTGATGGAAGAGAAGCCGCAGAGG CAATGGCGAAAGATGCAAAGAAGAATGAAATGATCTTAAGATCATCTGGCTGTGTAAATGTTGATGGATCGAAAAATTTTGCCTCAGTTTTCTCAAGGAG AGGCGAGAAAGGAGTGAATCAAGATTGCTGCATTGTATGGGAGGAATTTGGGTGTCAAGCAGACATGACATTTTGTGGGATATTTGATGGCCATGGTCAA TGGGGCCATTTTGTGGCGAAGAAAGTCCGAGAATCGATGGCTACATCTCTTCTGTGTAATTGGCAGGAGACTCTTGCTCAATGTTCACTTGATCCAGATA TTGACTTGGAATCGGATAAAAAACATCAAAGATTCAATATGTGGAAACATTCCTACCTAAAAACTTGTGCTGCTGTTGATCAAGAGCTAGAGCAGCATCG GAAAATAGATTCATTCTATAGTGGAACAACTGCCCTGACAATTGTTAGACAGGGTGAACATATTTTTGTAGCAAATGTTGGCGACTCTCGCGCTGTATTG GCTACAACAGCAGATGATGGAAGCCTGGTACAGGTTCAGCTTACTGTAGATTTCAAGCCTAATTTACCCCAGGAGACTGAACGGATACTTCAGTGCCGGG GACGTGTATTCTGTCTAGATGATGAGCCAGGTGTGCACAGAGTTTGGCAGCCAGATGCAGAATCACCCGGACTGGCAATGTCCAGAGCCTTTGGCGATTA CTGTGTAAAGAATTTCGGGCTTATTTCGGTGCCTGAAGTTACACAAAGGCATCTAACTAGCGAGGATCAATTTGTTATCCTGGCAACTGATGGGGTATGG GATGTAATCTCCAATCAAGAAGCAGTACAAATTGTGTCGTCGACACCAGATAGGGCAAAGGCAGCTAAGCGTCTAGTTCAGTCTGCTGTCCATGCTTGGA AACGCAAAAGGAAAGGGATTGCCATGGATGATATATCAGCCATTTGCCTCTTCGTTCACTCCTCCCCTCAATCTCAACAAGTCCATGCTGTTAGTACACC AAAATAG
AA sequence Show only first row Show all	>Potri.013G012200.2 pacid=42812214 polypeptide=Potri.013G012200.2.p locus=Potri.013G012200 ID=Potri.013G012200.2.v4.1 annot-version=v4.1 MGHFSSMFNGLAKSFTIRKVKSNGNGDGREAAEAMAKDAKKNEMILRSSGCVNVDGSKNFASVFSRRGEKGVNQDCCIVWEEFGCQADMTFCGIFDGHGQ WGHFVAKKVRESMATSLLCNWQETLAQCSLDPDIDLESDKKHQRFNMWKHSYLKTCAAVDQELEQHRKIDSFYSGTTALTIVRQGEHIFVANVGDSRAVL ATTADDGSLVQVQLTVDFKPNLPQETERILQCRGRVFCLDDEPGVHRVWQPDAESPGLAMSRAFGDYCVKNFGLISVPEVTQRHLTSEDQFVILATDGVW DVISNQEAVQIVSSTPDRAKAAKRLVQSAVHAWKRKRKGIAMDDISAICLFVHSSPQSQQVHAVSTPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27930			Protein phosphatase 2C family ...		Potri.013G012200 [exp]	0	1
AT5G38760			Late embryogenesis abundant pr...		Potri.017G108350 [exp]	3.87	0.7064
AT4G22720			Actin-like ATPase superfamily ...		Potri.007G129400 [exp]	4.24	0.6835
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.015G015275 [exp]	8.77	0.7416
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Potri.003G111500 [exp]	15.00	0.6572	Pt-PPNRT1.2
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Potri.015G015501 [exp]	15.42	0.6459
					Potri.016G068650 [exp]	17.77	0.7348
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.016G073800 [exp]	21.21	0.5902	Pt-CTS2.12
AT5G46230			Protein of unknown function, D...		Potri.004G064700 [exp]	21.81	0.6526
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.001G140000 [exp]	23.08	0.6345
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.007G143700 [exp]	29.49	0.7235

Compare expression of checked genes

Potri.013G012200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.