Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16785 1437 / 0 PLDZ1, PLDZETA1, PLDP1 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) AT3G05630 1420 / 0 PLDP2, PDLZ2, PLDZETA2 PHOSPHOLIPASE D ZETA 2, phospholipase D P2 (.1) AT5G25370 104 / 2e-22 PLDALPHA3 phospholipase D alpha 3 (.1) AT4G11830 97 / 5e-20 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G35790 96 / 6e-20 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT2G42010 96 / 8e-20 PLDBETA1 phospholipase D beta 1 (.1) AT4G11840 96 / 1e-19 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G11850 95 / 1e-19 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT1G52570 94 / 3e-19 PLDALPHA2 phospholipase D alpha 2 (.1) AT4G00240 92 / 1e-18 PLDBETA2 phospholipase D beta 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G211100 [exp] 1514 / 0 AT3G16785 1622 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Potri.010G006300 [exp] 1495 / 0 AT3G16785 1607 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Potri.003G037700 [exp] 102 / 7e-22 AT1G55180 1031 / 0.0 phospholipase D alpha 4 (.1) Potri.001G112100 [exp] 101 / 2e-21 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.003G015000 [exp] 98 / 2e-20 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G105600 [exp] 98 / 2e-20 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 96 / 6e-20 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G016100 [exp] 96 / 7e-20 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.014G074700 [exp] 96 / 1e-19 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020672 [exp] 1613 / 0 AT3G05630 1393 / 0.0 PHOSPHOLIPASE D ZETA 2, phospholipase D P2 (.1) Lus10016830 [exp] 1467 / 0 AT3G16785 1586 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Lus10029873 [exp] 1389 / 0 AT3G16785 1199 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Lus10037708 [exp] 820 / 0 AT3G16785 885 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Lus10036361 [exp] 107 / 2e-23 AT1G55180 968 / 0.0 phospholipase D alpha 4 (.1) Lus10041787 [exp] 101 / 2e-21 AT1G52570 1087 / 0.0 phospholipase D alpha 2 (.1) Lus10012699 [exp] 100 / 3e-21 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10001293 [exp] 98 / 2e-20 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10026377 [exp] 97 / 2e-20 AT2G42010 838 / 0.0 phospholipase D beta 1 (.1) Lus10005627 [exp] 97 / 3e-20 AT4G35790 969 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0479 [poplar] [flax] PLD PF00614 [poplar] [flax] PLDc Phospholipase D Active site motif CL0479 [poplar] [flax] PLD PF13091 [poplar] [flax] PLDc_2 PLD-like domain
Representative CDS sequence Show only first row Show all	>Potri.013G012300.2 pacid=42810822 polypeptide=Potri.013G012300.2.p locus=Potri.013G012300 ID=Potri.013G012300.2.v4.1 annot-version=v4.1 ATGGCAACAACAACAACAGAGCCACTGTTAGCGGCAGGGACTATGCATTCTGATAATGTCCATGCAAATTTGCATCCATCTTATTCATTCAGGCAATTCC CTGAACCAGGTTGGATTTTTGATGAATTGCCAAAAGCAACCATTGTTTCTGTCTCAAGACCTGATACTGCTGGAGATTTTAGCCCCATGCTTCTGTCTTA CACCATTGAATTACAATACAAACAGTTCAAGTGGCAGTTACTGAAGAAAGCATCACAAGTTCTCTACTTACATTTTGCTTTGAAGAAGCGTGCACTTATC GAGGAACTTCATGAAAAACAAGAGCAGGTTAAAGAATGGCTCCACAGTTTAGGAATAGTAGATCACGCACCAGTCATGCAAGATGCTGATGAACCGGATG ACGGTGCTGTTCCAGTTCATCATCAAGAAGAAAGTGTTAGAAACAGAGATGTCCCATCCATTGCTGCTTTGTCATTTCTTCGTCCGGCACTAGGAGGGCA GCAGGGTATTTCAGACAGAGCAAAGGTGGCAATGCAGAATTATTTGAATCATTTCCTAGGAAACTTGGATATCGTAAATTCGCCAGTGGTCTGCAAATTT TTGGAGGTCTCTAAGTTGTCCTTCTCGAGGGAATATGGTCCAAAGCTGAAAGAAGGTTACATTATGGCAAAGAATCTTTCAAAAATCTCCAAGGATGATA GTGATACAACATGTTTTCCCTGCCAATGGTTCGGTTTCTGTGACAACAACTGGCAGAAGGTGTGGGCTGTTTTGAAACCTGGGTTTTTGGCCCTTTTGGA AGATCCTTTCAACGCAAAAATCATAGATATTCTTGTTTTTGATGTTCTGCCAAACTCAAATGACAAAGGAGGAAACCAAGTATATTTAGCAAGCCAGATA AAGGAACGCAATCCTTTGTATTATGCATTTAAGGTTTCTGCCGGAAATCGGAGCATAAACCTGAGAAGCAAAAGTGGTAGTAAAGTTAAAGAATGGATTG CTGCAATCGAAGATGCTGGTTTGAGGACAAGTGAGGGGTGGTGTCATTCTCACCGCTATGGTTCCTATGCTCCTCCAAGGGGTTTAGCTGAAGATGGGAG TCAAGCTCAGTGGTTTGTGGATGGGCATGCAGCTTTTGAAGCAATTGCTTCTGCAATAGAGAATGCAAGATCAGAGATATTTATCACAGGCTGGTGGCTT TGCCCTGAGCTGTATCTAAGAAGGCCTTTCCAAGATCATGCTAGCTCCCGGCTTGATTCCTTGCTAGAAGCTAAAGCTAAGGAAGGGGTTCAGATCTATA TCCTTCTCTACAAGGAGGTTTCTATTGCTTTGAAAATCAACAGTATGTACAGCAAGAAAAGGCTTCTTAACATTCATGAGAATTTGAGGGTTCTGCGCCA TCCTGATCATTTCTCAACTGGTGTCTACTCATGGTCACACCATGAAAAACTAGTGATCATCGACTACCAGATTTGCTTTATTGGAGGATTAGATTTATGC TTTGGCCGTTATGACACTATTGAACATAGAGTAGGTGATTGTTCTGCTGACATATGGCCTGGAAAGGACTATTATAATCCAAGAGAATCAGAACCAAATT CTTGGGAAGACGTAATGAAGGATGAACTGGACCGTAGAAAATATCCTCGAATGCCATGGCATGATGTCCATTGTTCTCTCTGGGGACCGCCTTGCCGTGA CATTGCTAGGCACTTTGTTCAACGCTGGAACCACGCTAAGAGAAGCAAAGCACCAAATGAGCAAACAATTCCACTACTGATGCCTCGCCACCACATGGTC CTTCCTCATTACATGGGAAGAAGTATAGATATTGAAAGCAAGAATGGAGAAGGAAACCAGAAAGACACCAGCAGAATAGATTACTTTTCCTCAGTATCTC CAATCCGAGATATCCCTTTGCTTTTACCTCAGGAAGCTGATGCAACAGTTGTTAATGGTGTTAATCACGAGTTAACTGCCAAAAACATGAATAACGATCG TCTTGATCAATCAGCTTGGCACTGCGATAGTTTTTCATTCACTTTGCAGAAATCCAAGGATGGAAATTTGGCTCAAGACACACCAGTGAAAAATCCTGTT GATGAACATGATTTTGTGGATCTTGAAAGCATAATGCAGATTTCAGATCGGTCATCAGAAACATCTGAAAAAGATGTCCCTGATGTTTCTGCCAGCGAAT GTGGACAAGTAGGACCACGTGTCTCATGTCGTTGTCAGGTTATCAGAAGTGTCAGTCAGTGGTCAACAGGAGCCAGTCAGCATGAAGAAAGCATCCATAA GGCTTACTGTTCTCTCATTGAAAAAGCCGAACATTTTATCTACATAGAGAATCAGTTTTTCATATCAGGACTTTGTGGAGATGAGATTATCCAGAATCGT GTTTTGGATGCAATATACAAACGTGTTATTCAAGCTTACAAAGAAAATAAGTGCTTTCGAGTCATCATTGTCATACCACTTTCACCAGGTTTCCAGGGAG GTGTGGATGATGGTGGTGCAGCAACTGTTAGAGCCATCATGCATTGGCAGTATCGGACCATCTCCCGGAAGAAGACTTCAATTCTGTACAATCTTAACAC GTTGCTTGGTCCTAAAACACATGATTACATTTCTTTTTGTGGTCTAAGGACGTATGGTAGACTTTTTGTGGGAGGTCCGTTGGTCACAAGTCAGGTTTAC GTGCATAGCAAAGTTATGATAGTAGATGACAGGATTGCGTATATCGGATCATCTAACATCAATGATAGGAGTTTGCTTGGATCGAGAGACTCTGAGATTG GGATAGTTACTGAAGACAAGGAGTTTGTTGAATCATCAATGAACGGGGAGACTTGGAAAGCTGGAAAATTTGCTTATAGCCTGCGGCGCTCGCTGTGGTC TGAGCATCTTGGTCTTTCTTCAGGAGAGATAGATAAAATCAGTGATCCTGTAGCTGAGACAACATATAGAGATTTATGGTTGGCAACGGCAAAGGAAAAT TCAAAGATTTACCAGGATGTCTTTGCTTGTCTTCCTAATGATCATATCCACTCGAGAGCTGCTCTCAGACAAAGCATGAACCATTGGAAGGAAAAACTTG GTCACACAACCATTGACTTAGGAATAGCTCCTGAGAAGATAGAACGCAATGAAAATGGAGAGATTAAGATGATGGACCCAATTGAAAGACTGAAATTAGT AAAGGGCCATCTTGTTTCCTTTCCATTAGACTTCATGATGTGTCAAGAAGATTTAAGACCAGTATTCAATGAGGGAGAATTTTATGCATCCCCACAAGTA TTTCATTAA
AA sequence Show only first row Show all	>Potri.013G012300.2 pacid=42810822 polypeptide=Potri.013G012300.2.p locus=Potri.013G012300 ID=Potri.013G012300.2.v4.1 annot-version=v4.1 MATTTTEPLLAAGTMHSDNVHANLHPSYSFRQFPEPGWIFDELPKATIVSVSRPDTAGDFSPMLLSYTIELQYKQFKWQLLKKASQVLYLHFALKKRALI EELHEKQEQVKEWLHSLGIVDHAPVMQDADEPDDGAVPVHHQEESVRNRDVPSIAALSFLRPALGGQQGISDRAKVAMQNYLNHFLGNLDIVNSPVVCKF LEVSKLSFSREYGPKLKEGYIMAKNLSKISKDDSDTTCFPCQWFGFCDNNWQKVWAVLKPGFLALLEDPFNAKIIDILVFDVLPNSNDKGGNQVYLASQI KERNPLYYAFKVSAGNRSINLRSKSGSKVKEWIAAIEDAGLRTSEGWCHSHRYGSYAPPRGLAEDGSQAQWFVDGHAAFEAIASAIENARSEIFITGWWL CPELYLRRPFQDHASSRLDSLLEAKAKEGVQIYILLYKEVSIALKINSMYSKKRLLNIHENLRVLRHPDHFSTGVYSWSHHEKLVIIDYQICFIGGLDLC FGRYDTIEHRVGDCSADIWPGKDYYNPRESEPNSWEDVMKDELDRRKYPRMPWHDVHCSLWGPPCRDIARHFVQRWNHAKRSKAPNEQTIPLLMPRHHMV LPHYMGRSIDIESKNGEGNQKDTSRIDYFSSVSPIRDIPLLLPQEADATVVNGVNHELTAKNMNNDRLDQSAWHCDSFSFTLQKSKDGNLAQDTPVKNPV DEHDFVDLESIMQISDRSSETSEKDVPDVSASECGQVGPRVSCRCQVIRSVSQWSTGASQHEESIHKAYCSLIEKAEHFIYIENQFFISGLCGDEIIQNR VLDAIYKRVIQAYKENKCFRVIIVIPLSPGFQGGVDDGGAATVRAIMHWQYRTISRKKTSILYNLNTLLGPKTHDYISFCGLRTYGRLFVGGPLVTSQVY VHSKVMIVDDRIAYIGSSNINDRSLLGSRDSEIGIVTEDKEFVESSMNGETWKAGKFAYSLRRSLWSEHLGLSSGEIDKISDPVAETTYRDLWLATAKEN SKIYQDVFACLPNDHIHSRAALRQSMNHWKEKLGHTTIDLGIAPEKIERNENGEIKMMDPIERLKLVKGHLVSFPLDFMMCQEDLRPVFNEGEFYASPQV FH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Potri.013G012300 [exp]	0	1
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.005G040300 [exp]	6.70	0.7196
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.013G028200 [exp]	13.11	0.6858
AT5G10900			Calcineurin-like metallo-phosp...		Potri.001G196600 [exp]	15.68	0.7130
AT5G42870		ATPAH2	phosphatidic acid phosphohydro...		Potri.014G031000 [exp]	21.35	0.6663
AT1G76320	FAR1_related	FRS4	FAR1-related sequence 4 (.1.2)		Potri.003G207100 [exp]	25.33	0.7025
AT2G37130			Peroxidase superfamily protein...		Potri.006G129900 [exp]	32.24	0.6322
AT5G22450			unknown protein		Potri.009G164400 [exp]	40.03	0.6663
AT2G31570		ATGPX2	glutathione peroxidase 2 (.1)		Potri.007G126600 [exp]	42.14	0.6096
AT1G73220		1-Oct, ATOCT1	organic cation/carnitine trans...		Potri.015G029400 [exp]	43.81	0.6208
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.005G053700 [exp]	45.07	0.6649	Pt-SWP.2

Compare expression of checked genes

Potri.013G012300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.