Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05625 356 / 4e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015207 [exp] 384 / 6e-136 AT3G05625 344 / 2e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031474 [exp] 374 / 5e-132 AT3G05625 342 / 1e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001552 [exp] 216 / 1e-71 AT3G05625 203 / 1e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031484 [exp] 96 / 1e-22 AT1G09155 260 / 1e-85 phloem protein 2-B15 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G012400.1 pacid=42812700 polypeptide=Potri.013G012400.1.p locus=Potri.013G012400 ID=Potri.013G012400.1.v4.1 annot-version=v4.1 ATGGCTTTAACCCATAACTTCAATCACATATTTCCCACACCCTCTTCATCCTCGAAACATAAGCACTCTTTAACTACTACACTTCCATTTTCACCCAAAA CTCACACCAACTCACACTTCTTCAGCACTAACATTCCTTCAAGAATTCACAACCTTCAAAACCCACTACCAACTTTCACCAGAAGACTGTTTCTCCCTTC AGTTTCTGGCATTTGGGATGCCTTAACAGGAGGCAACAACAATGCCCGTGAAGCTGTTATGGCTATTAGACGTGGAATGCTACTCTTTAGACAGGGTGAT GTTTTGGGATCTTTAGTGGAGTTTGACAAGGCAATTGAGTTGGATACTCGTCAAAAAGCATATCTTTGGCAGAGGGGGCTATCACTTTACTATGTTGATA GGTTTGAAGATGGGGCAGAGCAGTTTCGAATAGATGTTGCACAGAATCCAAATGACACGGAGGAGTCAATATGGTGCTTTCTGTGTGAAGCTCAATTGTA TGGAGTTGATGAAGCAAGGAAGCGATTTCTTGAGGTTGGTAGGGATCCAAGACCTGTTATGCGGGAAGCTTATAACATGTTTAAAGATGGTGGTGACCCA GAAAAGTTTGCCACTGCATTTTCAAATGGACAGGGGAATGAGTATTTTTATGCATCTTTATATGCCGGTCTATATCATGAAGCTCAGAAAGAACCAGAGG CGGCCAAAGTTCAAATAATTGCTGCATGTAGGTCTCCTTATGGACAAAGGTCTGATGACTATATGGCGTCTCTTGCCAAGGTTCACTGTTTATGTCGAAA CTGGAGCAGTGACTGA
AA sequence Show only first row Show all	>Potri.013G012400.1 pacid=42812700 polypeptide=Potri.013G012400.1.p locus=Potri.013G012400 ID=Potri.013G012400.1.v4.1 annot-version=v4.1 MALTHNFNHIFPTPSSSSKHKHSLTTTLPFSPKTHTNSHFFSTNIPSRIHNLQNPLPTFTRRLFLPSVSGIWDALTGGNNNAREAVMAIRRGMLLFRQGD VLGSLVEFDKAIELDTRQKAYLWQRGLSLYYVDRFEDGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARKRFLEVGRDPRPVMREAYNMFKDGGDP EKFATAFSNGQGNEYFYASLYAGLYHEAQKEPEAAKVQIIAACRSPYGQRSDDYMASLAKVHCLCRNWSSD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05625			Tetratricopeptide repeat (TPR)...		Potri.013G012400 [exp]	0	1
AT5G55220			trigger factor type chaperone ...		Potri.015G065900 [exp]	1.41	0.9747
AT5G04900		NOL	NYC1-like (.1)		Potri.008G014200 [exp]	2.00	0.9725
AT3G15110			unknown protein		Potri.011G097800 [exp]	4.24	0.9719
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Potri.014G078800 [exp]	5.91	0.9664	CPFTSY.1
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Potri.008G010400 [exp]	8.94	0.9642
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Potri.014G106400 [exp]	9.48	0.9682	TMP14.2
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Potri.001G237800 [exp]	10.39	0.9716	ALB3.2
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G040800 [exp]	11.66	0.9659
AT5G22620			phosphoglycerate/bisphosphogly...		Potri.004G187700 [exp]	13.22	0.9691
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Potri.001G044000 [exp]	16.58	0.9634

Compare expression of checked genes

Potri.013G012400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.