Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G012733 [exp] 283 / 6e-99 ND / Potri.013G012766 [exp] 275 / 8e-96 ND / Potri.005G022200 [exp] 204 / 7e-68 ND / Potri.005G195200 [exp] 176 / 2e-56 AT5G64620 42 / 7e-05 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.005G022250 [exp] 159 / 6e-50 ND / Potri.005G022300 [exp] 158 / 2e-49 ND / Potri.005G022400 [exp] 157 / 2e-49 ND / Potri.001G073350 [exp] 140 / 2e-42 ND / Potri.001G127500 [exp] 46 / 2e-06 AT4G02250 98 / 3e-26 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027768 [exp] 93 / 6e-24 ND / Lus10040145 [exp] 91 / 5e-23 ND 40 / 4e-04 Lus10035527 [exp] 90 / 9e-23 AT4G24640 40 / 4e-04 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10000961 [exp] 89 / 2e-22 ND 39 / 5e-04 Lus10007598 [exp] 88 / 9e-22 ND 42 / 2e-04 Lus10011019 [exp] 72 / 7e-15 AT4G17610 1595 / 0.0 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10000822 [exp] 46 / 3e-06 AT1G47960 113 / 1e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10017013 [exp] 45 / 4e-06 AT1G47960 112 / 4e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10008892 [exp] 45 / 7e-06 AT1G47960 48 / 6e-07 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10037793 [exp] 44 / 2e-05 AT3G17152 74 / 5e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.013G012800.1 pacid=42812772 polypeptide=Potri.013G012800.1.p locus=Potri.013G012800 ID=Potri.013G012800.1.v4.1 annot-version=v4.1 ATGGGTTCCAAGAATCGCGTCATGATTCTTGCTGCCACTGTCTTGTATCTCTCCCTGCATTTTCCTTCTCAAACTGAGGCAGGAGCGGAATTGGTGAGTA AGGTTTGCAAACATGGCCAAAACTATGAATCCTGCGTTCAAACCCTGACGTCCGATCCACAAACTTTGTCAGCGCCTAATGGAAAGGCGATTGCAGAGAA AGCCCTGGAAATAGCAAGAAAAGAATCGGTTGATACAAGCGATTTCTTTACTGGCTTGGCTCACACAAACCCTGCATCCAAGTCAGTACTTCAGCAATGT GCATCCAATTTTAAAGAGGCAGTTCAATTCTTGAACCTCAGTGGGCTAGAAGGTGGCACGGCAAGCTTAGATGTGCATTATGCTCTTGATGATGCTGAAT CTTGTGAAAGTGTAATGTCTTCAGGCCGTGTTCAAATTGATTCAGCTGCTGCTAGAATCCAGAAATGGACGACTGTCTATGATGCTGCCCAGGCAACCGT AGTATTTCTGGAAAATTGA
AA sequence Show only first row Show all	>Potri.013G012800.1 pacid=42812772 polypeptide=Potri.013G012800.1.p locus=Potri.013G012800 ID=Potri.013G012800.1.v4.1 annot-version=v4.1 MGSKNRVMILAATVLYLSLHFPSQTEAGAELVSKVCKHGQNYESCVQTLTSDPQTLSAPNGKAIAEKALEIARKESVDTSDFFTGLAHTNPASKSVLQQC ASNFKEAVQFLNLSGLEGGTASLDVHYALDDAESCESVMSSGRVQIDSAAARIQKWTTVYDAAQATVVFLEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.013G012800 [exp]	0	1
AT1G14540			Peroxidase superfamily protein...		Potri.001G458900 [exp]	3.31	0.5965
AT1G76210			Arabidopsis protein of unknown...		Potri.005G248700 [exp]	30.59	0.5312
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G112900 [exp]	40.39	0.5316
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G061500 [exp]	60.00	0.5238
					Potri.002G118950 [exp]	73.75	0.4709
					Potri.002G234850 [exp]	109.48	0.4752
AT4G22080		RHS14	root hair specific 14 (.1)		Potri.011G008000 [exp]	112.71	0.4564
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Potri.002G228700 [exp]	157.86	0.4492
AT5G20045			unknown protein		Potri.008G015100 [exp]	210.18	0.4305
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Potri.002G193300 [exp]	218.63	0.4268

Compare expression of checked genes

Potri.013G012800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.