Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56230 778 / 0 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2) AT2G22660 140 / 9e-35 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2) AT4G37900 131 / 2e-31 Protein of unknown function (duplicated DUF1399) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G042800 [exp] 143 / 6e-35 AT4G37900 795 / 0.0 Protein of unknown function (duplicated DUF1399) (.1) Potri.002G108900 [exp] 132 / 1e-31 AT2G22660 696 / 0.0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029871 [exp] 933 / 0 AT1G56230 771 / 0.0 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2) Lus10020675 [exp] 927 / 0 AT1G56230 747 / 0.0 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2) Lus10004273 [exp] 143 / 3e-35 AT2G22660 679 / 0.0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2) Lus10019239 [exp] 140 / 5e-34 AT2G22660 747 / 0.0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G013000.1 pacid=42812680 polypeptide=Potri.013G013000.1.p locus=Potri.013G013000 ID=Potri.013G013000.1.v4.1 annot-version=v4.1 ATGTCTGCGACTCGAAACAGAACTCACGAGAGCTCAGATGTATTGTCAACGAGATCACTCAGTGAAATATCAGAGGTTGAAACAGTTCGTTTAAGTGTTG ATCTTGTGTCAGCTTCAAGAAAAAATCTTGGGTTGTTGAGAACTGTTAGCGAGTCTCCCTGGCTTCATGAGAGAGCTACTATTCTTGAAGCTATAAGAAG GTATGATGAGCTTTGGATGCCGTTGATTTCTGATCTGATGGAGGGGTCTTCACCTCCTATGGTTCTTCCTCCTCTCGATGTTGAATGGGTTTGGTTTTGT CACACCTTGAATCCGGTGAGTTACAGGAAATACTGTGAGAAAAGGTTCTCAAAACTGATTGGAAAACCAGCAATTTTTTATAAAGAGAACGAAGAGTATT CATTGATGAGATGTGAAGAGCTTTGGATGAAAAGATATCCAAATGAGTCTTTTGAGAATGAAGTTGATATTACTTCATCAAATTTGCAAGACCTTCATGT TGCTCAAGATCACGAGGATCTACTGAATGAAGTTGAGAAGCAAAGACATGTTTATAGCAAATTTTCATGGCCATACATGAGTGAGATTGTTTACTTGATA GCAGCAAGGCAAAGATACAAAGGATTCTTGTATGTGTTGCAGAGATTTGCAGATGATTGCTCATCAAGATTATTGCCTAGCTTGGATATTTTGCTCATGT GGGTGACACATCAGAGTTATCCAACAGTATATGCAGAGGATTTGAAAGAGATGGAGGGTGATATGGGGAAGATAGTGGGCTTATGGGAGACTGTAAGAAG TAAAGAGGTGGAAGAGACAAAGAAGCTATGGGAAAGAGCCTTTGACCAGCCTTATGTGAAAGCTGGTGGAGCCATAGAATTTGGCGGGGTTGCTTCAATA GTCAAGCCACCAGTGTATTGGGAGGTCTCTGATACAGATGTCAACACCAAATACAAGTCCCTGCTGCCTAGGTTCCTACTGGAGGTATGTGTTTTCGTGA GGCTCAATTCTAGGATGAAGCCAGTGCAACAGGAAAGACAACATAATTTTCTTCGTCTGCAATTAGTAAGATGTCACAGGGAGCTGAAGATTGATAAACC AATTTCCAGCTTCTCCTCGGATACATGGAAAAAAGTTACACATCTCTACTGTGAGTTTGGAACCAGAGGACTAATGCTTGAGGTTCGGAAACATGGAGGT GGCTGTTTTAAAACAAGTAAATTGGAAGATTCTAAGACATTTCTTTGGAATGATTTGTTAAGAGCACCCTCTCTTACGCTGGAAACACATTTAGATGATA AACAAGCGAGGGCTGTTGCTTCAATAACCCCACCAGCCCAAGCACCATACTTGCTGAAATGTGTACCAGACAAAGTCACAGACGATTCAGGGGCCATGGT CTCGGATGTGATTCTGAGAATGAACAATTATAAGCCTCAAGAAGGTCGGTGGTTGTCTCGCACCGTCCTTGATCATGCAGGGAGGGAGTGTTTTGTTGTC CGAATGAGAGTGGCAGGAGGGTTTTGGAGGAGAGGAGATGAAACCCCATCAGCAGTCAAATGGGAGGATAGGATTATAGAGATACGCGAAGGTTCTTGGT CTTATGTTGCTGGTTCGATTGGTAGAGCACCTGAGAAAATAGTAGGAACCGCAACACCAAGAGAACCTCCAGAACATTGGCAAGCAGCATGGTGTTTTTC AACAGGAGATGAATTGCTGATAAGTTGGGAATCATCAGCATCAATGTCTGACCTGAATTTTTGTTTGAGAAACCAAAAATCTTCTGACTCATTGGTGAAG TTGTTGAAGGGTAAGAAAATGCAATATCGAGCCAGGAAAATTAGTTCAAAGAGCAAAGAGCATGAAAAGCGAGAAAATACAGAAGAAACTGACGAGGAAG ACGAAGACGAGGAAGGGTTTCTGACTCTTGTTCGGTTCACAGAAGATAATCCAATAGGAAGGCCAACAGCTCTTCTAAATTGGAAGTTATTGATAGTTGA ACTATTGCCTGAAGAAGATGCAGTTTTTGTACTACTTCTATGCATTTCAATACTTCGAAGTATATCAGAAATGAGAAAGGAAGACGTTGGAAGCTTGCTT ATTAGGAGAAGATTAAAAGAAGCAAAACTTGGTGCTAGAGATTGGGGTTCTGTGATCCTTCATCCTTCCTCATTTTCATCTACCATTTCTTCACCTTACC TTCAACCTTGGTACTGGAATGCAAAATCAGTGATCGCACCTGATGGAGGAGATAATGTAACTAAGCAACCGGCTGTGAGTCATTCACCAGTTGAAGGTGG TGATAAGCTGTACAAAAAAGGGATTATGGCATGA
AA sequence Show only first row Show all	>Potri.013G013000.1 pacid=42812680 polypeptide=Potri.013G013000.1.p locus=Potri.013G013000 ID=Potri.013G013000.1.v4.1 annot-version=v4.1 MSATRNRTHESSDVLSTRSLSEISEVETVRLSVDLVSASRKNLGLLRTVSESPWLHERATILEAIRRYDELWMPLISDLMEGSSPPMVLPPLDVEWVWFC HTLNPVSYRKYCEKRFSKLIGKPAIFYKENEEYSLMRCEELWMKRYPNESFENEVDITSSNLQDLHVAQDHEDLLNEVEKQRHVYSKFSWPYMSEIVYLI AARQRYKGFLYVLQRFADDCSSRLLPSLDILLMWVTHQSYPTVYAEDLKEMEGDMGKIVGLWETVRSKEVEETKKLWERAFDQPYVKAGGAIEFGGVASI VKPPVYWEVSDTDVNTKYKSLLPRFLLEVCVFVRLNSRMKPVQQERQHNFLRLQLVRCHRELKIDKPISSFSSDTWKKVTHLYCEFGTRGLMLEVRKHGG GCFKTSKLEDSKTFLWNDLLRAPSLTLETHLDDKQARAVASITPPAQAPYLLKCVPDKVTDDSGAMVSDVILRMNNYKPQEGRWLSRTVLDHAGRECFVV RMRVAGGFWRRGDETPSAVKWEDRIIEIREGSWSYVAGSIGRAPEKIVGTATPREPPEHWQAAWCFSTGDELLISWESSASMSDLNFCLRNQKSSDSLVK LLKGKKMQYRARKISSKSKEHEKRENTEETDEEDEDEEGFLTLVRFTEDNPIGRPTALLNWKLLIVELLPEEDAVFVLLLCISILRSISEMRKEDVGSLL IRRRLKEAKLGARDWGSVILHPSSFSSTISSPYLQPWYWNAKSVIAPDGGDNVTKQPAVSHSPVEGGDKLYKKGIMA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56230			Protein of unknown function (D...		Potri.013G013000 [exp]	0	1
AT1G24450		NFD2	NUCLEAR FUSION DEFECTIVE 2, Ri...		Potri.015G073900 [exp]	2.00	0.9042
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Potri.006G184500 [exp]	3.16	0.9231
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Potri.018G048600 [exp]	4.12	0.8686	Pt-GPA1.1
AT2G38430			unknown protein		Potri.019G030050 [exp]	5.91	0.8995
AT2G28580			Plant protein of unknown funct...		Potri.007G132300 [exp]	9.79	0.9003
AT2G34560			P-loop containing nucleoside t...		Potri.004G065100 [exp]	11.09	0.9018
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Potri.014G169600 [exp]	16.06	0.8510
AT5G65960			GTP binding (.1)		Potri.002G177100 [exp]	20.32	0.8863
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Potri.004G164500 [exp]	20.49	0.8648	GAS41.1
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.017G138401 [exp]	20.78	0.8916

Compare expression of checked genes

Potri.013G013000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.