Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27920 631 / 0 F-box family protein (.1) AT5G01720 307 / 3e-95 RNI-like superfamily protein (.1) AT4G15475 129 / 3e-31 F-box/RNI-like superfamily protein (.1) AT1G77000 94 / 2e-20 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT1G21410 93 / 2e-20 SKP2A F-box/RNI-like superfamily protein (.1) AT5G25350 91 / 8e-19 EBF2 EIN3-binding F box protein 2 (.1) AT2G25490 87 / 1e-17 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT1G80630 84 / 1e-16 RNI-like superfamily protein (.1) AT5G23340 81 / 4e-16 RNI-like superfamily protein (.1) AT1G80570 71 / 2e-12 RNI-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022600 [exp] 997 / 0 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.019G123400 [exp] 345 / 9e-110 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 342 / 2e-108 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 335 / 8e-106 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G254100 [exp] 104 / 4e-23 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G068500 [exp] 104 / 5e-23 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 103 / 9e-23 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 99 / 3e-21 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G088800 [exp] 91 / 2e-19 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029869 [exp] 493 / 9e-170 AT5G27920 441 / 5e-150 F-box family protein (.1) Lus10001264 [exp] 345 / 2e-109 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10012214 [exp] 326 / 1e-98 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10029870 [exp] 134 / 1e-36 AT5G27920 125 / 4e-34 F-box family protein (.1) Lus10012764 [exp] 135 / 1e-32 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10002165 [exp] 115 / 1e-26 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002913 [exp] 102 / 3e-22 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002014 [exp] 100 / 5e-22 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10020676 [exp] 90 / 1e-21 AT5G27920 59 / 2e-11 F-box family protein (.1) Lus10030102 [exp] 100 / 2e-21 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13516 [poplar] [flax] LRR_6 Leucine Rich repeat
Representative CDS sequence Show only first row Show all	>Potri.013G013100.3 pacid=42812376 polypeptide=Potri.013G013100.3.p locus=Potri.013G013100 ID=Potri.013G013100.3.v4.1 annot-version=v4.1 ATGTCAACTCAATCAACACCAATACTTTCCGTCTTAACAGAAGATTTACTCATTCGGGTCAATGAGAAACTCGTCCAAGACTCAGATCGCAAGACATGGA GGCTCATTTGCAAAGAATTCCATCGAGTTGACTCCATCACACGCAAAACTCTACGCGTCCTTCATGTCGAGTTCTTACCGACTCTCCTCAAGAACTACAC CAATCTCCTCACGCTAGACCTATCAGTCTGTCCATGTATCGAGGATGGGACCATAACATTGTTACTACATCGTGTTGATCACTCGATGTGGGCAAGGAAC TTGAAGTTTTTGAACTTGAGGAGGGCTAATGGGCTGAAGTTTGCGGGATTGGAAATGTTGGTGGGCGCCTGTAAGGGTTTGGAGAGTGTTGATGTGTCTT ATTGTCGTGGGTTTGGTGATAGGGAGGCAGCAGCGATATCAGGTTGTGGAGGACTGAAGGAGTTGAGTATGGATAAGTGTTTAGGAGTTAGTGATGTTGG ATTGGCTAAGATTGTTGTTGGGTGTGGGAGATTGGTGAGGTTGAGTTTGAAGTGGTGTATGGAGATAAGTGATCTTGGTGTTGAGCTTTTGTGCAAGAAG TGCTTGGAGTTGAAGTTTCTAGATGTTTCTTATCTCAAGGTGACAAGCGACTCGCTTCGTTCTATTGCTGCTTTGCCAAAGCTGGAGGATTTGGCTATGG TGGGATGCCCTTTAGTGAATGATGTTGGATTGCAATTTCTTGAAAATGGATGCCCTTTACTACAGAAAATTGATGTTTCAAGGTGTGATTGTGTTAGTTC ATATGGGTTAAGTGCCTTAATTAGAGGACATAATGGTCTTCTACAGATTGATGCAGGTTACACCATTTCAGAATTTTCTGCAAACTTTGTTGAGTGCATG CAGGAATTGAAGAATCTGAACGCCATCATAATTGACGGGGCTCGAGTTTCTGACACTGTTTTCCAGACAATCAGCAATAACTGCAGGTCTTTAATCGAAA TTGGGTTGAGCAAATGCACAGGGGTCACCAATATGCGAATTATGCAGCTGGTATCTGGCTGTGTCAATTTGAAGACCATCAATTTAACATGTTGCCGTTC CATAACCGATGCTGCAATTTCTGCTATTGCAGACTCTTGTAGGAACCTTCTGTGCCTGAAGTTAGAGTCTTGTAATATGATCACTGAGAAGAGTCTTGAA CAGCTTGGATCACATTGTGCGCTACTTGAAGAGCTCGATCTCACTGACTGTTTTGGCATAAATGACAGAGGGCTTGAACGCCTTTCTAGATGTTCCAGAC TTCTATGTTTGAAATTAGGACTTTGCACCAACATATCAGACACAGGTCTTTTTTATATTGCTTCCAATTGCTCACAGCTTCATGAACTTGATCTATACCG CTGTATGGGCATCGGAGATGATGGTTTAGCAGCTTTATCAAGTGGCTGCAAGAAGTTAAGGAAGCTGAACTTGTCATACTGCATTGAGGTCACAGACAAA GGGATGGAGTCTCTTGGCTATCTGGAGGAACTCTCTGACCTGGAGCTGAGAGCGCTTGATAAAATTACGGGCGTAGGTTTGACAGCATTGGTGACCAGGT GTAAGAGACTGACATATTTGGACCTAAAACATTGCAAGAAAGTTGATGATACTGGGTTTTGGGCACTTGCCTATTACTCACGGAACTTGCGACAGATAAA TTTGAGCTACTGTTCTATCACAGACATGGCATTATGCATGGTGATGGGAAATTTGACACGCCTGCAAGACGCAGATCTGGTGCACCTCAGGAATGTCACT GTGGAGGGGTTCGACCTTGCACTTAGAGCCTGCTGTGTCCGAATCAAGAAGGTCAAGCTAGTTGCTGCTCTTGGTTTCTTACTCTCCTCTGAAGTACTGG GGATTTTGCACGCCAGAGGTTGCAGAATTAGATGGGATTAG
AA sequence Show only first row Show all	>Potri.013G013100.3 pacid=42812376 polypeptide=Potri.013G013100.3.p locus=Potri.013G013100 ID=Potri.013G013100.3.v4.1 annot-version=v4.1 MSTQSTPILSVLTEDLLIRVNEKLVQDSDRKTWRLICKEFHRVDSITRKTLRVLHVEFLPTLLKNYTNLLTLDLSVCPCIEDGTITLLLHRVDHSMWARN LKFLNLRRANGLKFAGLEMLVGACKGLESVDVSYCRGFGDREAAAISGCGGLKELSMDKCLGVSDVGLAKIVVGCGRLVRLSLKWCMEISDLGVELLCKK CLELKFLDVSYLKVTSDSLRSIAALPKLEDLAMVGCPLVNDVGLQFLENGCPLLQKIDVSRCDCVSSYGLSALIRGHNGLLQIDAGYTISEFSANFVECM QELKNLNAIIIDGARVSDTVFQTISNNCRSLIEIGLSKCTGVTNMRIMQLVSGCVNLKTINLTCCRSITDAAISAIADSCRNLLCLKLESCNMITEKSLE QLGSHCALLEELDLTDCFGINDRGLERLSRCSRLLCLKLGLCTNISDTGLFYIASNCSQLHELDLYRCMGIGDDGLAALSSGCKKLRKLNLSYCIEVTDK GMESLGYLEELSDLELRALDKITGVGLTALVTRCKRLTYLDLKHCKKVDDTGFWALAYYSRNLRQINLSYCSITDMALCMVMGNLTRLQDADLVHLRNVT VEGFDLALRACCVRIKKVKLVAALGFLLSSEVLGILHARGCRIRWD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27920			F-box family protein (.1)		Potri.013G013100 [exp]	0	1
AT2G45380			unknown protein		Potri.014G069100 [exp]	7.68	0.9342
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Potri.017G130700 [exp]	14.07	0.9322
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Potri.010G088600 [exp]	18.43	0.9300
AT3G07090			PPPDE putative thiol peptidase...		Potri.002G241700 [exp]	19.44	0.9288
AT1G09140		ATSRP30.1, ATSR...	Serine/Arginine-Rich Protein S...		Potri.005G024600 [exp]	20.00	0.9286
AT2G20560			DNAJ heat shock family protein...		Potri.011G057601 [exp]	28.14	0.9272
AT1G53540			HSP20-like chaperones superfam...		Potri.001G238700 [exp]	31.70	0.9227	Pt-HSP17.13
AT5G10830			S-adenosyl-L-methionine-depend...		Potri.005G067500 [exp]	32.86	0.8445
AT3G08970		TMS1, ATERDJ3A	THERMOSENSITIVE MALE STERILE 1...		Potri.016G120000 [exp]	33.04	0.9249
AT1G30070			SGS domain-containing protein ...		Potri.011G085100 [exp]	33.25	0.9246

Compare expression of checked genes

Potri.013G013100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.