Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05610 580 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 571 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 499 / 6e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 483 / 2e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26450 398 / 9e-132 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33230 389 / 2e-128 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G15980 392 / 3e-128 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 383 / 4e-126 ATPME2 pectin methylesterase 2 (.1) AT5G04960 381 / 6e-126 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 378 / 3e-124 ATPMEPCRF pectin methylesterase PCR fragment F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022900 [exp] 968 / 0 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 593 / 0 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051200 [exp] 467 / 5e-159 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 458 / 2e-155 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021600 [exp] 435 / 5e-147 AT4G33230 484 / 1e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021300 [exp] 433 / 4e-146 AT4G33230 459 / 5e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209000 [exp] 432 / 9e-146 AT4G33230 483 / 2e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209200 [exp] 426 / 1e-143 AT5G49180 459 / 2e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.008G011200 [exp] 407 / 1e-135 AT3G10710 621 / 0.0 root hair specific 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006940 [exp] 522 / 1e-180 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020909 [exp] 503 / 3e-173 AT3G05610 547 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033466 [exp] 498 / 6e-171 AT3G05610 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10015211 [exp] 474 / 2e-160 AT3G05610 420 / 3e-137 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031469 [exp] 468 / 2e-158 AT3G05610 442 / 4e-147 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029866 [exp] 463 / 1e-151 AT1G02810 511 / 6e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10037489 [exp] 431 / 7e-145 AT5G27870 480 / 3e-164 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039927 [exp] 429 / 8e-144 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10003968 [exp] 389 / 5e-129 AT5G49180 456 / 3e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 391 / 6e-129 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.013G013400.1 pacid=42811280 polypeptide=Potri.013G013400.1.p locus=Potri.013G013400 ID=Potri.013G013400.1.v4.1 annot-version=v4.1 ATGTCTTACGGGGATGATTCAAAGAGAAAGAGGAGATTGGCCATTATCGGCGTCTCTTCTATGCTCTTGGTAGCTATGGTTGTAGCTGTGACCGTTGGCG TTGGCCTTAACAATGACGGTAATGACGGCCTCAATGGCAGCAGTCATAAAAGCACTAGTCAGGTTTCTGCCTCGGTGAAAGCCGTCAAAGCCATTTGCCA GCCCACTGATTACAGAAAAACATGTGAAGAAAGCCTCCAAAAAGCTGCTGGAAACACCACCGATCCTAAGGAGTTGATCAAAATAGCATTCAAGATTGCA GAGAAGCAAATTAATGAGGCTTCCGAGAAATCAAAGCTTTTGGAGGAACTCTCAAAGGATCCAAGAACCCGAGGGGCTCTTCAGAGCTGCAAAGAGCTTA TGAACATGTCTGTTGGTGAGCTCAAGCAATCTCTTGACAAAGTAACGGATTTTGATCTTAGCGAGTTAGAGAAAATGATGGCAGATGTTAAGACCTGGCT TAGTGCTTCCATCACATATCAAGAGACTTGCTTGGACGGGTTTGAAAACACAACCACTGATGCTGGAAAGAAAATGAAGAAGGGAATGAAGCTGGGCATG GAGCTTAGCGCCAATCTCCTTGACATCGTTTCCGGGATCTCTTCCGCAATCCCTTCATTGGAAAGTTTCACCCACCGCCGCCTTCTTCAAGACGATCTAC CTGTTCTTGGCCATGGTGATCAATTCCCCACGTGGACTGACTTTGGAACCCGCAGACTCCTAGCTGCACCCGTTTCGAAGATTAAGGCTGACATTGTTGT GGCTAAGGATGGAAGTGGAGATTTCTCAACTATCAGAGAAGCATTGAAACATGTTCCCATCAAGAGCAAAAAGGCCTTTGTGTTACACATTAAGGCAGGA GTTTATCAAGAGTACCTTGAGATCAGTAAGGGCATGATTAATTTGGTGGTGATTGGAGATGGCAAGGAAAATACTCGCATCATCGGAAACAAGAACTTTG TCGATGGAATTAACACTTTCCACACCGCAACAGTCGCTGTCCTCGGAGATAACTTTGTGGCCAAGAATATTGGTTTCGAGAACAATGCTGGTGCCATCAA ACATCAGGCTGTGGCGTTGAGAGTTTCAGCTGATTACGCTATCTTCTACAACTGCTCAATGGACGGACACCAGGATACATTGTACACACATGCCAAACGT CAATTCTACCGTGACTGCAGCATCTCCGGCACCATTGACTTCGTCTTCGGTGATGCTTCTGCAGTCTTCCAAAACTGCAAATTCTTGGTCCGCAAGCCAT TGGAAAACCAGCAGTGCATTGTGACCGCTCAAGGCAGGAAAATGAGGAGGCAGCCATCAGCTCTTATCATCCAAAGCAGCACTATCACAGCTCACCCTGA CCTATTCCCTGAAAGGAAACAATTCAAGTCATACCTCGGCCGTCCATGGAAGGAATACTCAAGAACAATCATCATGGAGTCATTTATCGACGATCTCATC CAGCCCGAAGGATGGTTGCCGTGGCTCGGAACTTTCGGACTCAAGACTTGTTGGTACACAGAATTCAACAACTACGGTCCTGGTTCTAGCAAGAATCTTC GTGTGAAGTGGAATGGAATCAAGACCATCAACCGTCAACATGCCATGGATTTCACACCAGGAAGGTTCCTAAAGGGTGATTCCTGGATCAAGGCCACCGG GATCCCCTACACACCTTTCTTGGTCAGAAAATAA
AA sequence Show only first row Show all	>Potri.013G013400.1 pacid=42811280 polypeptide=Potri.013G013400.1.p locus=Potri.013G013400 ID=Potri.013G013400.1.v4.1 annot-version=v4.1 MSYGDDSKRKRRLAIIGVSSMLLVAMVVAVTVGVGLNNDGNDGLNGSSHKSTSQVSASVKAVKAICQPTDYRKTCEESLQKAAGNTTDPKELIKIAFKIA EKQINEASEKSKLLEELSKDPRTRGALQSCKELMNMSVGELKQSLDKVTDFDLSELEKMMADVKTWLSASITYQETCLDGFENTTTDAGKKMKKGMKLGM ELSANLLDIVSGISSAIPSLESFTHRRLLQDDLPVLGHGDQFPTWTDFGTRRLLAAPVSKIKADIVVAKDGSGDFSTIREALKHVPIKSKKAFVLHIKAG VYQEYLEISKGMINLVVIGDGKENTRIIGNKNFVDGINTFHTATVAVLGDNFVAKNIGFENNAGAIKHQAVALRVSADYAIFYNCSMDGHQDTLYTHAKR QFYRDCSISGTIDFVFGDASAVFQNCKFLVRKPLENQQCIVTAQGRKMRRQPSALIIQSSTITAHPDLFPERKQFKSYLGRPWKEYSRTIIMESFIDDLI QPEGWLPWLGTFGLKTCWYTEFNNYGPGSSKNLRVKWNGIKTINRQHAMDFTPGRFLKGDSWIKATGIPYTPFLVRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05610			Plant invertase/pectin methyle...		Potri.013G013400 [exp]	0	1
AT3G57710			Protein kinase superfamily pro...		Potri.013G020100 [exp]	186.24	0.6416
					Potri.013G056750 [exp]	209.68	0.6099
					Potri.005G097250 [exp]	274.44	0.6061

Compare expression of checked genes

Potri.013G013400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.