Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) AT4G02340 389 / 5e-136 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 356 / 1e-122 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 347 / 1e-119 ATSEH soluble epoxide hydrolase (.1) AT2G26750 334 / 1e-114 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 312 / 3e-106 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT3G51000 291 / 9e-98 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 54 / 4e-08 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 47 / 1e-05 alpha/beta-Hydrolases superfamily protein (.1) AT1G68890 46 / 3e-05 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G010700 [exp] 399 / 4e-140 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 397 / 2e-139 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 394 / 2e-138 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 388 / 2e-135 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 385 / 8e-135 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 349 / 5e-120 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G023400 [exp] 325 / 6e-113 AT3G05600 238 / 8e-79 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 317 / 4e-108 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 188 / 1e-57 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029878 [exp] 452 / 3e-161 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 451 / 1e-160 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10038649 [exp] 367 / 3e-127 AT4G15960 420 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 364 / 2e-126 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 356 / 2e-123 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 355 / 1e-122 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 330 / 5e-113 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 313 / 3e-106 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10028340 [exp] 305 / 7e-103 AT3G51000 422 / 6e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 304 / 9e-103 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.013G013500.1 pacid=42810898 polypeptide=Potri.013G013500.1.p locus=Potri.013G013500 ID=Potri.013G013500.1.v4.1 annot-version=v4.1 ATGGAGGGGATAAGCCATAGAATGGTGAAAGTGAATGACATTGACATGCACATAGCTGAGAAAGGCCAAGGTCCTGTTGTGCTATTCCTCCATGGATTTC CAGAGCTTTGGTACTCCTGGCGCCATCAGATTCTTGCATTAAGTTCCCTGGGCTACCATGCTGTTGCACCAGATCTTAGGGGCTATGGTGACACTGAAGC TCCAGCATCAATCTCTAGCTATTCTTGTCTTCATATTGTTGGTGACCTTATTGCACTCATTGACTATCTTGGGGTGGAGCAAGTGTTTCTTGTTGCACAT GACTGGGGTGCTCTTATTGGATGGTACTTGTGCTTGTTCAGGCCTGATAGAGTGAAGGCATATGTCTGCCTTAGTGTTCCATACAGGCCAAGAAATCCCA AGATGAAGCCAGTGGAGAGCATGAAACTTGTATTTGGAGAAGACTATTACATGTGCAGATTCCAGGAACCAGGAGTGATTGAAGCTGAGATTGCATGTGC TGGAACTGAAGAAGTGCTAAAGAAAATCTTGACTGATCGCAAACCAGGCCCCCCTTGCTTGCCGAAAGAAAATCCGTTCGGAATCTATCCAGAGGAATCA GTTACCATGCCATCTTGGCTCCCAGAAGCAGACCTTTCTTTCTATGCCACGAAATATAGCCAGAAAGGGTTCACTGGAGGGTTGAACTACTACAGAGCTC TAGATTTGAACTGGGAGCTCACAGCATCGTGGACTGGGGCACCAGTGATAGTGCCCGTAAAGTTTGTGGTGGGAGATCTTGACATGGTCTATACTACTCC AGGGATGAAGGAATTTGTCAATAGTGGTGGATTCAAGCACTATGTGCCATTATTGGAGGAAGTTGTTGTGATGGAAGGAGTTGGTCATTTCATTAACCAA GAGAAGGCTGAGGAGATCAGCAATCACATTTATGACTACATTAGCAAATACTGA
AA sequence Show only first row Show all	>Potri.013G013500.1 pacid=42810898 polypeptide=Potri.013G013500.1.p locus=Potri.013G013500 ID=Potri.013G013500.1.v4.1 annot-version=v4.1 MEGISHRMVKVNDIDMHIAEKGQGPVVLFLHGFPELWYSWRHQILALSSLGYHAVAPDLRGYGDTEAPASISSYSCLHIVGDLIALIDYLGVEQVFLVAH DWGALIGWYLCLFRPDRVKAYVCLSVPYRPRNPKMKPVESMKLVFGEDYYMCRFQEPGVIEAEIACAGTEEVLKKILTDRKPGPPCLPKENPFGIYPEES VTMPSWLPEADLSFYATKYSQKGFTGGLNYYRALDLNWELTASWTGAPVIVPVKFVVGDLDMVYTTPGMKEFVNSGGFKHYVPLLEEVVVMEGVGHFINQ EKAEEISNHIYDYISKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05600			alpha/beta-Hydrolases superfam...		Potri.013G013500 [exp]	0	1
AT4G15040			Subtilisin-like serine endopep...		Potri.003G120350 [exp]	1.41	0.9590
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Potri.001G464500 [exp]	2.44	0.9429	GER2.25
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Potri.010G092800 [exp]	2.44	0.9238
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Potri.011G131051 [exp]	3.46	0.9143
AT5G14920			Gibberellin-regulated family p...		Potri.001G350600 [exp]	8.12	0.9001
AT5G15150	HD	ATHB3, HAT7, AT...	HOMEOBOX FROM ARABIDOPSIS THAL...		Potri.017G081700 [exp]	21.33	0.8977
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.013G040401 [exp]	25.29	0.8389
AT3G09870			SAUR-like auxin-responsive pro...		Potri.006G125100 [exp]	42.80	0.8889
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Potri.018G033200 [exp]	45.00	0.8873
AT3G52610			unknown protein		Potri.016G078000 [exp]	48.37	0.8869

Compare expression of checked genes

Potri.013G013500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.