Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15920 213 / 1e-68 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT3G16690 204 / 3e-65 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT5G13170 182 / 1e-55 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT3G48740 173 / 2e-52 SWEET11, AtSWEET11 Nodulin MtN3 family protein (.1) AT5G23660 169 / 7e-51 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1) AT2G39060 166 / 5e-50 SWEET9, AtSWEET9 Nodulin MtN3 family protein (.1) AT5G50790 166 / 1e-49 SWEET10, AtSWEET10 Nodulin MtN3 family protein (.1) AT5G50800 166 / 2e-49 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT4G25010 164 / 7e-49 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1) AT5G62850 162 / 7e-49 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G013900 [exp] 361 / 8e-126 AT4G15920 205 / 4e-65 Nodulin MtN3 family protein (.1) Potri.008G220600 [exp] 215 / 2e-69 AT4G15920 261 / 3e-88 Nodulin MtN3 family protein (.1) Potri.013G014500 [exp] 209 / 4e-67 AT4G15920 241 / 2e-80 Nodulin MtN3 family protein (.1) Potri.013G014400 [exp] 194 / 2e-61 AT4G15920 209 / 5e-68 Nodulin MtN3 family protein (.1) Potri.005G023900 [exp] 193 / 7e-61 AT3G16690 190 / 2e-60 Nodulin MtN3 family protein (.1) Potri.015G101700 [exp] 191 / 2e-59 AT5G23660 312 / 3e-107 homolog of Medicago truncatula MTN3 (.1) Potri.019G030500 [exp] 186 / 5e-58 AT2G39060 272 / 3e-92 Nodulin MtN3 family protein (.1) Potri.003G166800 [exp] 177 / 3e-54 AT5G13170 290 / 3e-98 senescence-associated gene 29 (.1) Potri.005G187300 [exp] 172 / 2e-52 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015196 [exp] 291 / 4e-97 AT4G15920 208 / 2e-65 Nodulin MtN3 family protein (.1) Lus10001475 [exp] 192 / 6e-60 AT4G15920 244 / 4e-81 Nodulin MtN3 family protein (.1) Lus10008861 [exp] 178 / 7e-55 AT5G50790 246 / 1e-81 Nodulin MtN3 family protein (.1) Lus10024770 [exp] 179 / 2e-54 AT5G23660 259 / 4e-86 homolog of Medicago truncatula MTN3 (.1) Lus10023249 [exp] 177 / 3e-54 AT5G50790 246 / 2e-81 Nodulin MtN3 family protein (.1) Lus10000310 [exp] 177 / 1e-53 AT5G13170 295 / 3e-100 senescence-associated gene 29 (.1) Lus10009782 [exp] 176 / 3e-53 AT5G23660 261 / 8e-87 homolog of Medicago truncatula MTN3 (.1) Lus10015754 [exp] 173 / 2e-52 AT5G13170 289 / 7e-98 senescence-associated gene 29 (.1) Lus10003143 [exp] 171 / 1e-51 AT5G13170 295 / 4e-100 senescence-associated gene 29 (.1) Lus10018932 [exp] 169 / 3e-51 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [poplar] [flax] MtN3-like PF03083 [poplar] [flax] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Potri.013G013800.1 pacid=42811071 polypeptide=Potri.013G013800.1.p locus=Potri.013G013800 ID=Potri.013G013800.1.v4.1 annot-version=v4.1 ATGGCTAAAATAAGTTTCTTTATCGGCATCGTTGGTAATATCATTTCTCTACTGGTTTTCACTTCTCCCATAAAGACTTTTTGGAAGGTGGTGAAAAGGA AATCAACAGAGAATTACAAGGGGGCTCCATACATAACTACACTGCTGAGCACAAGTCTATGGGCATTCTATGGACTTCTCAAGCCAGATATTCTTGTTGT AACCGTGAATGGTGCTGGCGCCATCTTTCAACTCACCTATGTCACTCTCTTTCTCATGTACGCTCCGAAGGACAAGAAGATTAAGACGGCAAAGCTGGTG GCCATATTGAATGCTGGTTTTCTTGGAGTGGTAATTGCAATAACTCTTCTAGCAATGCATGGAAGTTTGCAAACTACATTTGTTGGGGTTTTATGTGCTG CGTTAACCATTGGCATGTACGCAGCACCCCTTTCAGCTATGAAAAGAGTGATGAGGACCAAGAGTGTGCAGTACATGCCGTTTTTTCTCTCATTTTTCCT CTTCCTAAACGGAGGTGTTTGGTCTGTTTATGCCGTGCTTGTCAAAGACTATTACATTGGAGTGCCGAATGTTGTTGGTTTTGTACTGGGGTCAGCCCAA TTGATCCTTTACATAATCTACAGGAATAAGTCAGCAGCTATGATCGAAGAAAAAGGCCCAGTCCACATCGAGGCGAAGGAAGGCGTCGAGATGCCTGCGA AGGGTGATAATGATGAGGAAGCTGGCAATCTGAAGAGCAGAAGCCTAGCTGAGGGAAAGGCCAAGAGCCTGCCAAAGCCATCGGTTGAGAGGCAACACAG CTTGCAAAAGCTCACCAAGACACTCTCTATAGGTGCTTATGAGTTATTGCAACATTCAAGCTGGGCTAATGATGCCGTTTGA
AA sequence Show only first row Show all	>Potri.013G013800.1 pacid=42811071 polypeptide=Potri.013G013800.1.p locus=Potri.013G013800 ID=Potri.013G013800.1.v4.1 annot-version=v4.1 MAKISFFIGIVGNIISLLVFTSPIKTFWKVVKRKSTENYKGAPYITTLLSTSLWAFYGLLKPDILVVTVNGAGAIFQLTYVTLFLMYAPKDKKIKTAKLV AILNAGFLGVVIAITLLAMHGSLQTTFVGVLCAALTIGMYAAPLSAMKRVMRTKSVQYMPFFLSFFLFLNGGVWSVYAVLVKDYYIGVPNVVGFVLGSAQ LILYIIYRNKSAAMIEEKGPVHIEAKEGVEMPAKGDNDEEAGNLKSRSLAEGKAKSLPKPSVERQHSLQKLTKTLSIGAYELLQHSSWANDAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Potri.013G013800 [exp]	0	1
					Potri.003G038525 [exp]	5.65	0.8546
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Potri.003G218900 [exp]	7.93	0.8332
AT5G07620			Protein kinase superfamily pro...		Potri.004G232800 [exp]	9.48	0.8067
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Potri.008G161600 [exp]	16.97	0.7989
AT2G26850			F-box family protein (.1)		Potri.001G273900 [exp]	18.76	0.8009
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.016G046200 [exp]	20.71	0.8045	FAD2.3
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.016G101801 [exp]	23.81	0.7860
AT5G03330			Cysteine proteinases superfami...		Potri.006G125900 [exp]	27.56	0.7480
AT2G46550			unknown protein		Potri.014G100300 [exp]	29.79	0.7736
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Potri.003G133500 [exp]	30.88	0.7599

Compare expression of checked genes

Potri.013G013800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.