Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15920 203 / 2e-64 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT3G16690 187 / 1e-58 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT5G13170 181 / 3e-55 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT3G48740 176 / 2e-53 SWEET11, AtSWEET11 Nodulin MtN3 family protein (.1) AT5G50790 172 / 1e-51 SWEET10, AtSWEET10 Nodulin MtN3 family protein (.1) AT5G40260 170 / 2e-51 SWEET8, AtSWEET8 Nodulin MtN3 family protein (.1.2) AT2G39060 169 / 4e-51 SWEET9, AtSWEET9 Nodulin MtN3 family protein (.1) AT5G23660 170 / 5e-51 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1) AT5G50800 169 / 1e-50 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT4G25010 163 / 3e-48 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G013800 [exp] 344 / 3e-119 AT4G15920 214 / 3e-69 Nodulin MtN3 family protein (.1) Potri.008G220600 [exp] 221 / 2e-71 AT4G15920 261 / 3e-88 Nodulin MtN3 family protein (.1) Potri.013G014500 [exp] 220 / 4e-71 AT4G15920 241 / 2e-80 Nodulin MtN3 family protein (.1) Potri.005G023900 [exp] 196 / 2e-61 AT3G16690 190 / 2e-60 Nodulin MtN3 family protein (.1) Potri.013G014400 [exp] 191 / 6e-60 AT4G15920 209 / 5e-68 Nodulin MtN3 family protein (.1) Potri.019G030500 [exp] 186 / 2e-57 AT2G39060 272 / 3e-92 Nodulin MtN3 family protein (.1) Potri.015G101700 [exp] 174 / 2e-52 AT5G23660 312 / 3e-107 homolog of Medicago truncatula MTN3 (.1) Potri.003G166800 [exp] 172 / 7e-52 AT5G13170 290 / 3e-98 senescence-associated gene 29 (.1) Potri.005G187300 [exp] 169 / 3e-51 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015196 [exp] 268 / 1e-87 AT4G15920 208 / 2e-65 Nodulin MtN3 family protein (.1) Lus10001475 [exp] 195 / 7e-61 AT4G15920 244 / 4e-81 Nodulin MtN3 family protein (.1) Lus10003143 [exp] 183 / 5e-56 AT5G13170 295 / 4e-100 senescence-associated gene 29 (.1) Lus10000310 [exp] 176 / 4e-53 AT5G13170 295 / 3e-100 senescence-associated gene 29 (.1) Lus10023249 [exp] 173 / 1e-52 AT5G50790 246 / 2e-81 Nodulin MtN3 family protein (.1) Lus10008861 [exp] 172 / 3e-52 AT5G50790 246 / 1e-81 Nodulin MtN3 family protein (.1) Lus10011335 [exp] 172 / 5e-52 AT5G13170 268 / 1e-89 senescence-associated gene 29 (.1) Lus10015754 [exp] 172 / 2e-51 AT5G13170 289 / 7e-98 senescence-associated gene 29 (.1) Lus10018932 [exp] 170 / 2e-51 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Lus10024770 [exp] 169 / 3e-50 AT5G23660 259 / 4e-86 homolog of Medicago truncatula MTN3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [poplar] [flax] MtN3-like PF03083 [poplar] [flax] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Potri.013G013900.3 pacid=42811955 polypeptide=Potri.013G013900.3.p locus=Potri.013G013900 ID=Potri.013G013900.3.v4.1 annot-version=v4.1 ATGCTAAAGAAAGTGCATATAAAAAGCTTACTTCTTTGTGTCTTCATCCCTTCAAGAACCTCTCTTCGATCCATTGCATTATTCATGGCTAGCTTGAGCT TCTTTGTTGGCATCATGGGTAATATAATTTCTTTACTGCTTTTTGTTTCTCCAATAAAGACCTTTTGGGGAGTGGTGAAGAAGAAATCAACAGAGAATTA CAAAGGGGTTCCATACATAACCACACTGCTGAGCACAAGTTTATGGACATTCTATGGACTTATCAAGCCAGATATTCTTGTTGTATCAGTGAATGGAGTT GGAGCAATCTTCCAATTCATTTATGTCACACTCTTTCTCATTTATGCTCCTAAGGATACGAAGGTTACGATGGCAAAGTTTGTGGCCATTTTGAATGTTG GTTTTCTTGGAGCAGTAATTATGGTTGCTCTTCTAGCAATTCATGGAAATCTGCGAATTACCTTCGTTGGAATTTTATGTGCTGCATTAACAATTGGCAT GTATGCAGCGCCATTATCAGCCATGAGAAGAGTAATAAAGACCAAGAGCGTGGAGTACATGCCATTTTTGCTCTCTTTTTTCCTGTTCCTCAATGGAGGT GTTTGGTCAGCTTATTCAGTGCTTGTCAAAGACTTCTACATTGGAGTGCCTAATGTAGTTGGTTTTGTATTGGGGTCAGCTCAATTGATCCTATATTTAA TGTACAAGAACAAGTCAGCATCAGCCAAAACAATGAAGGCGATAGAAGAAGATGGCTCGGTACAACTGGTGAAAGGAAGTGTCGATATACTTGTACACAG AGATAAGGACGATGAAGATGACGGTGGTATTGACGAGGGCAACTTGAAGAACAGAAGTCTCAGTAAGGGAAAGAGCCTGCCAAAGCCATCGGTACTTAAT AGAGAATACAGCTATACAAAAGATCACGAAGACACTCTCTCCGAGTAA
AA sequence Show only first row Show all	>Potri.013G013900.3 pacid=42811955 polypeptide=Potri.013G013900.3.p locus=Potri.013G013900 ID=Potri.013G013900.3.v4.1 annot-version=v4.1 MLKKVHIKSLLLCVFIPSRTSLRSIALFMASLSFFVGIMGNIISLLLFVSPIKTFWGVVKKKSTENYKGVPYITTLLSTSLWTFYGLIKPDILVVSVNGV GAIFQFIYVTLFLIYAPKDTKVTMAKFVAILNVGFLGAVIMVALLAIHGNLRITFVGILCAALTIGMYAAPLSAMRRVIKTKSVEYMPFLLSFFLFLNGG VWSAYSVLVKDFYIGVPNVVGFVLGSAQLILYLMYKNKSASAKTMKAIEEDGSVQLVKGSVDILVHRDKDDEDDGGIDEGNLKNRSLSKGKSLPKPSVLN REYSYTKDHEDTLSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Potri.013G013900 [exp]	0	1
AT1G06330			Heavy metal transport/detoxifi...		Potri.002G005300 [exp]	5.91	0.7496
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G188200 [exp]	8.00	0.6939
AT1G73220		1-Oct, ATOCT1	organic cation/carnitine trans...		Potri.012G037400 [exp]	9.38	0.7397
AT1G76980			unknown protein		Potri.002G075400 [exp]	17.32	0.6312
AT3G52600		ATCWINV2	cell wall invertase 2 (.1.2)		Potri.016G077500 [exp]	19.13	0.7208	Pt-VI1.1
AT3G62200			Putative endonuclease or glyco...		Potri.013G003100 [exp]	20.34	0.6749
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Potri.014G123700 [exp]	21.16	0.6494
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.017G003950 [exp]	22.91	0.6901
AT1G18470			Transmembrane Fragile-X-F-asso...		Potri.015G050300 [exp]	26.32	0.6376
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Potri.018G058600 [exp]	30.19	0.6549

Compare expression of checked genes

Potri.013G013900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.