Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15920 209 / 6e-68 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT3G16690 207 / 4e-67 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT4G10850 173 / 2e-53 SWEET7, AtSWEET7 Nodulin MtN3 family protein (.1) AT1G21460 171 / 8e-53 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT5G50800 172 / 1e-52 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT5G23660 169 / 8e-52 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1) AT5G40260 165 / 1e-50 SWEET8, AtSWEET8 Nodulin MtN3 family protein (.1.2) AT5G62850 164 / 2e-50 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) AT5G13170 165 / 6e-50 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT5G50790 164 / 1e-49 SWEET10, AtSWEET10 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G023900 [exp] 274 / 2e-93 AT3G16690 190 / 2e-60 Nodulin MtN3 family protein (.1) Potri.013G014500 [exp] 268 / 4e-91 AT4G15920 241 / 2e-80 Nodulin MtN3 family protein (.1) Potri.008G220600 [exp] 258 / 3e-87 AT4G15920 261 / 3e-88 Nodulin MtN3 family protein (.1) Potri.013G013800 [exp] 196 / 7e-62 AT4G15920 214 / 3e-69 Nodulin MtN3 family protein (.1) Potri.013G013900 [exp] 192 / 3e-60 AT4G15920 205 / 4e-65 Nodulin MtN3 family protein (.1) Potri.003G166800 [exp] 172 / 6e-53 AT5G13170 290 / 3e-98 senescence-associated gene 29 (.1) Potri.005G187300 [exp] 171 / 1e-52 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Potri.002G072600 [exp] 170 / 2e-52 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.002G072700 [exp] 170 / 2e-52 AT1G21460 345 / 5e-121 Nodulin MtN3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001475 [exp] 195 / 6e-62 AT4G15920 244 / 4e-81 Nodulin MtN3 family protein (.1) Lus10015196 [exp] 183 / 7e-56 AT4G15920 208 / 2e-65 Nodulin MtN3 family protein (.1) Lus10015754 [exp] 180 / 1e-55 AT5G13170 289 / 7e-98 senescence-associated gene 29 (.1) Lus10003200 [exp] 178 / 2e-55 AT4G10850 255 / 1e-85 Nodulin MtN3 family protein (.1) Lus10018932 [exp] 176 / 9e-55 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Lus10000310 [exp] 177 / 1e-54 AT5G13170 295 / 3e-100 senescence-associated gene 29 (.1) Lus10003143 [exp] 168 / 3e-51 AT5G13170 295 / 4e-100 senescence-associated gene 29 (.1) Lus10017302 [exp] 167 / 4e-51 AT4G10850 254 / 4e-85 Nodulin MtN3 family protein (.1) Lus10028634 [exp] 166 / 5e-51 AT1G21460 359 / 1e-126 Nodulin MtN3 family protein (.1) Lus10023249 [exp] 166 / 9e-51 AT5G50790 246 / 2e-81 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [poplar] [flax] MtN3-like PF03083 [poplar] [flax] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Potri.013G014400.1 pacid=42812206 polypeptide=Potri.013G014400.1.p locus=Potri.013G014400 ID=Potri.013G014400.1.v4.1 annot-version=v4.1 ATGTTTAGCATAATTACCCTTTTTGGGATACTAGGCAACATCACCACTGGTCTAGTTTACCTCTCTCCAGCGAAAACGTTTTGGAGAATTGCAAGGAACA GATCAACTGAAGAGTTTGAAAGCATCCCTTACATTTGCAAGTTACTTAACGCATACCAGTGGGTCTACTATGGAATCATCAAGCCGAACAGCGTGCTTGT TGCGACGATTAATGGTTTTGGTGCTGTGGTTGAGCTTGTTTTCATCGTGATATTTCTGATGTTTGCATCTACTCAGAAAATAAGGGTTAGGACAGCCATA CTATTTGGAGTTCTGGATTTGGTGTTTCCTGCAGTATCATTCTTGCTCATGCAGTTGATTTTACATGGACAATTGAGGATTGATATTTCAGGCATGTTTT GTGTTGTCTTCAGTATGATCACATATGGATCACCTCTTTCAGCTATGAAAACAGTGGTAGCAACGAAGAGTGTGGAGTACATGCCATTCCTGCTATCATT TTTTCTCTTCATAAATGGAGGAGTCTGGACTGTGTATGCCTTTCTTACAGAAGACTATTTTATTGGAATACCAAATGGAACTGGGTTTCTTCTGGGGACA GCACAGTTGATTTTATATGTCACATACATGAAGCCTAGGTCCTCCGAGAAAATATCTGATAACTTGGAGGACGGAAGTAAACATGAGCCCCTTATCCCAT CTTCCAATTTGGTTTCCTAG
AA sequence Show only first row Show all	>Potri.013G014400.1 pacid=42812206 polypeptide=Potri.013G014400.1.p locus=Potri.013G014400 ID=Potri.013G014400.1.v4.1 annot-version=v4.1 MFSIITLFGILGNITTGLVYLSPAKTFWRIARNRSTEEFESIPYICKLLNAYQWVYYGIIKPNSVLVATINGFGAVVELVFIVIFLMFASTQKIRVRTAI LFGVLDLVFPAVSFLLMQLILHGQLRIDISGMFCVVFSMITYGSPLSAMKTVVATKSVEYMPFLLSFFLFINGGVWTVYAFLTEDYFIGIPNGTGFLLGT AQLILYVTYMKPRSSEKISDNLEDGSKHEPLIPSSNLVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Potri.013G014400 [exp]	0	1
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Potri.010G118000 [exp]	1.73	0.7774
					Potri.005G096000 [exp]	3.60	0.7272
AT5G26594		ARR24	response regulator 24 (.1)		Potri.002G253000 [exp]	4.00	0.8037
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.002G143800 [exp]	4.89	0.7813
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Potri.001G073800 [exp]	4.89	0.7431
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Potri.001G073900 [exp]	5.91	0.6801
AT3G01170			Ribosomal protein L34e superfa...		Potri.004G121900 [exp]	6.92	0.6972
AT5G15790			RING/U-box superfamily protein...		Potri.004G114800 [exp]	7.74	0.7528
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G148000 [exp]	7.93	0.7092
AT4G12070			unknown protein		Potri.001G017000 [exp]	9.48	0.7112

Compare expression of checked genes

Potri.013G014400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.