Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15920 241 / 3e-80 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT3G16690 214 / 6e-70 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT5G50800 186 / 4e-58 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT3G48740 182 / 2e-56 SWEET11, AtSWEET11 Nodulin MtN3 family protein (.1) AT5G23660 177 / 1e-54 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1) AT4G25010 174 / 1e-53 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1) AT4G10850 165 / 2e-50 SWEET7, AtSWEET7 Nodulin MtN3 family protein (.1) AT5G13170 164 / 2e-49 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT2G39060 160 / 2e-48 SWEET9, AtSWEET9 Nodulin MtN3 family protein (.1) AT5G40260 159 / 2e-48 SWEET8, AtSWEET8 Nodulin MtN3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G220600 [exp] 291 / 6e-100 AT4G15920 261 / 3e-88 Nodulin MtN3 family protein (.1) Potri.013G014400 [exp] 268 / 5e-91 AT4G15920 209 / 5e-68 Nodulin MtN3 family protein (.1) Potri.005G023900 [exp] 262 / 1e-88 AT3G16690 190 / 2e-60 Nodulin MtN3 family protein (.1) Potri.013G013900 [exp] 221 / 2e-71 AT4G15920 205 / 4e-65 Nodulin MtN3 family protein (.1) Potri.013G013800 [exp] 211 / 1e-67 AT4G15920 214 / 3e-69 Nodulin MtN3 family protein (.1) Potri.005G187300 [exp] 168 / 8e-52 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Potri.002G072600 [exp] 168 / 1e-51 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.002G072800 [exp] 168 / 1e-51 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.002G072700 [exp] 167 / 2e-51 AT1G21460 345 / 5e-121 Nodulin MtN3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001475 [exp] 249 / 4e-83 AT4G15920 244 / 4e-81 Nodulin MtN3 family protein (.1) Lus10015196 [exp] 207 / 3e-65 AT4G15920 208 / 2e-65 Nodulin MtN3 family protein (.1) Lus10015754 [exp] 180 / 1e-55 AT5G13170 289 / 7e-98 senescence-associated gene 29 (.1) Lus10000310 [exp] 179 / 3e-55 AT5G13170 295 / 3e-100 senescence-associated gene 29 (.1) Lus10002364 [exp] 177 / 6e-55 AT5G62850 268 / 7e-91 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10018932 [exp] 172 / 5e-53 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Lus10003200 [exp] 169 / 5e-52 AT4G10850 255 / 1e-85 Nodulin MtN3 family protein (.1) Lus10028634 [exp] 165 / 2e-50 AT1G21460 359 / 1e-126 Nodulin MtN3 family protein (.1) Lus10023249 [exp] 164 / 4e-50 AT5G50790 246 / 2e-81 Nodulin MtN3 family protein (.1) Lus10008861 [exp] 164 / 9e-50 AT5G50790 246 / 1e-81 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [poplar] [flax] MtN3-like PF03083 [poplar] [flax] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Potri.013G014500.1 pacid=42810826 polypeptide=Potri.013G014500.1.p locus=Potri.013G014500 ID=Potri.013G014500.1.v4.1 annot-version=v4.1 ATGGAAAGTCTCAGTTTGATTATTGGAGCACTAGGTAATATTATTTCAGTGTTACTCTTTCTTTCTCCTGTGGGAGTATTTCGGCGTATTTTGAAGCATC GATCGACTGAAGAATTTGAGAGCCTTCCTTACATTTGCACACTATTAAACTCTTCCCTGTGGACTTACTATGGTATTATCAAGACTGGAGAGTTTCTCGT GGCCACTATAAATGGGTTTGGTGTTGTCGTTGAGATTGTTCTCTTGACATTGTTCCTTGTTTTTGCACCTCCAAGAATTAGGGCAAAGACTGCCATGCTT ATTGGGATTTTGGATGTGGGGTTTCTAGCAGCAGCAATATTGGTTTGCCAGTTATTATTGCAGGGTGATATGAAGATCGATATCATAGGATTCTTGGGTG CTGGACTTAACGTTGTCATGTATGGTTCTCCTCTTGCAGCCATGAAAACAGTGGTGAGGACTAAAAGTGTGGAGTATATGCCTTTCCTCCTCTCCCTTTT CGTTTTCTTGAATGGAGGGGTGTGGACTTGCTACGCCGTGCTAAAGAAAGATTGGTTTCTAGGAGTGGCAAATGTGGCTGGATTCTTTCTTGGAGCAGCT CAACTAATACTTTATGCAATATATTGGAAACCCAAGTCATCAAAGAATACAGCATCAAAGGATTCAGAGCATGGTTCACAGCATGAACACCTTTTACCAT CTTCCAGCCATTTTAGAGAAAATAATGAAGCATAG
AA sequence Show only first row Show all	>Potri.013G014500.1 pacid=42810826 polypeptide=Potri.013G014500.1.p locus=Potri.013G014500 ID=Potri.013G014500.1.v4.1 annot-version=v4.1 MESLSLIIGALGNIISVLLFLSPVGVFRRILKHRSTEEFESLPYICTLLNSSLWTYYGIIKTGEFLVATINGFGVVVEIVLLTLFLVFAPPRIRAKTAML IGILDVGFLAAAILVCQLLLQGDMKIDIIGFLGAGLNVVMYGSPLAAMKTVVRTKSVEYMPFLLSLFVFLNGGVWTCYAVLKKDWFLGVANVAGFFLGAA QLILYAIYWKPKSSKNTASKDSEHGSQHEHLLPSSSHFRENNEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Potri.013G014500 [exp]	0	1
AT4G27745			Yippee family putative zinc-bi...		Potri.014G101600 [exp]	1.41	0.9628
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.009G022800 [exp]	2.44	0.9571
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Potri.004G032400 [exp]	5.29	0.9484
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.005G223300 [exp]	6.32	0.9452
AT4G37710			VQ motif-containing protein (....		Potri.007G006200 [exp]	7.34	0.9493
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G188750 [exp]	8.36	0.9317
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G193200 [exp]	8.48	0.9370
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.015G003600 [exp]	9.16	0.9364
AT2G23060			Acyl-CoA N-acyltransferases (N...		Potri.003G182500 [exp]	9.94	0.9315
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.016G023340 [exp]	12.00	0.9158

Compare expression of checked genes

Potri.013G014500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.