Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25940 132 / 3e-41 TFIIB zinc-binding protein (.1) AT1G20065 73 / 2e-18 unknown protein AT4G07950 45 / 3e-07 DNA-directed RNA polymerase, subunit M, archaeal (.1) AT1G01210 45 / 3e-07 DNA-directed RNA polymerase, subunit M, archaeal (.1) AT2G38560 37 / 0.001 RDO2, TFIIS REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G015900 [exp] 39 / 0.0001 AT4G07950 124 / 5e-38 DNA-directed RNA polymerase, subunit M, archaeal (.1) Potri.016G138100 [exp] 37 / 0.001 AT2G38560 402 / 3e-140 REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015458 [exp] 187 / 5e-62 AT3G25940 134 / 6e-41 TFIIB zinc-binding protein (.1) Lus10030228 [exp] 40 / 8e-05 AT4G07950 120 / 6e-36 DNA-directed RNA polymerase, subunit M, archaeal (.1) Lus10034247 [exp] 39 / 0.0003 AT2G38560 295 / 1e-98 REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF01096 [poplar] [flax] TFIIS_C Transcription factor S-II (TFIIS)
Representative CDS sequence Show only first row Show all	>Potri.013G015000.1 pacid=42812148 polypeptide=Potri.013G015000.1.p locus=Potri.013G015000 ID=Potri.013G015000.1.v4.1 annot-version=v4.1 ATGGCACATGCTCGAGGAGGTGATTTCATGTTCTGTGATTTGTGTGGAACGATGATGTTTTTATATTCAAAGGAGCATGTTGAATGTCCTTTGTGCAAAT TTAAGAAAAGTGCAAAAGATCTAAGTGAAAGAGAAATAAGCTATCAAGTCAGCTCTGAGGATATGAGGAGGGATCTAGGCATCTCACATTTTGAAGGAAA GATGGAAGTGAAAGACATGGAGATAAATAAGAAATGTGAAAAATGCGGCCACACAAAGCTTAAATTTTCAACCAGACAAATGAGATCAGCAGACGAGGGC CAAACGACTTTTTTTCATTGTGCTAATTGCTCATATACATTTACTGAGAACTGA
AA sequence Show only first row Show all	>Potri.013G015000.1 pacid=42812148 polypeptide=Potri.013G015000.1.p locus=Potri.013G015000 ID=Potri.013G015000.1.v4.1 annot-version=v4.1 MAHARGGDFMFCDLCGTMMFLYSKEHVECPLCKFKKSAKDLSEREISYQVSSEDMRRDLGISHFEGKMEVKDMEINKKCEKCGHTKLKFSTRQMRSADEG QTTFFHCANCSYTFTEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25940			TFIIB zinc-binding protein (.1...		Potri.013G015000 [exp]	0	1
AT2G33340		MAC3B	MOS4-associated complex 3B (....		Potri.010G066000 [exp]	5.74	0.7840
AT1G45332			Translation elongation factor ...		Potri.001G123600 [exp]	9.05	0.8157
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.010G145150 [exp]	17.43	0.7808
AT4G28450			nucleotide binding;protein bin...		Potri.007G137300 [exp]	20.39	0.7551
AT1G15420			unknown protein		Potri.001G173300 [exp]	20.78	0.7647
AT3G01800			Ribosome recycling factor (.1)		Potri.001G333700 [exp]	23.23	0.7647
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Potri.001G030200 [exp]	24.61	0.7695
AT1G10490			Domain of unknown function (DU...		Potri.005G085600 [exp]	26.15	0.7441
AT5G11240			transducin family protein / WD...		Potri.010G005400 [exp]	27.65	0.7525
AT4G16630			DEA(D/H)-box RNA helicase fami...		Potri.005G241300 [exp]	28.98	0.7638

Compare expression of checked genes

Potri.013G015000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.