Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05545 290 / 5e-94 RING/U-box superfamily protein (.1) AT2G47700 203 / 2e-61 RFI2 RED AND FAR-RED INSENSITIVE 2, RING/U-box superfamily protein (.1) AT4G13490 89 / 3e-20 RING/U-box superfamily protein (.1) AT2G15260 81 / 1e-16 RING/U-box superfamily protein (.1) AT2G38970 44 / 0.0002 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G14320 41 / 0.0007 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G024700 [exp] 685 / 0 AT3G05545 256 / 5e-81 RING/U-box superfamily protein (.1) Potri.005G139900 [exp] 42 / 0.0006 AT4G34040 160 / 1e-41 RING/U-box superfamily protein (.1) Potri.007G045500 [exp] 42 / 0.0006 AT4G34040 163 / 1e-42 RING/U-box superfamily protein (.1) Potri.002G107902 [exp] 42 / 0.0006 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020655 [exp] 439 / 1e-152 AT3G05545 262 / 1e-83 RING/U-box superfamily protein (.1) Lus10029886 [exp] 426 / 2e-147 AT3G05545 258 / 2e-82 RING/U-box superfamily protein (.1) Lus10031491 [exp] 280 / 2e-90 AT3G05545 219 / 4e-67 RING/U-box superfamily protein (.1) Lus10040413 [exp] 43 / 0.0006 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10023527 [exp] 42 / 0.0007 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.013G015600.1 pacid=42812294 polypeptide=Potri.013G015600.1.p locus=Potri.013G015600 ID=Potri.013G015600.1.v4.1 annot-version=v4.1 ATGGGGCTGGGGAACAGTGAAAATGACGTGATCGTGGACGATGGAGATGGAGGAGGTGGTGGTGGAGGATTGAATGGCAAGTCGTTTGGAGGGTCAGTTT CATGTTCGATTTGTCTTGAAGTGGTTGCTGACAATGGAGATCGATCATGGGCCAAGCTTCAATGTGGACATCAGTTTCATCTGGACTGCATCGGCTCAGC ATTTAATGTAAAGGGTGCAATGCAATGTCCTAATTGCCGGAAAATTGAGAAGGGCCAATGGCTCTATGCAAATGGTTGTCGTTCACTGCCAGAATTTAGC ATGGATGACTGGGCTCATGATGAGGACCTTTATGACTTAAGCTACTCTGAAATGTCCTTTGGGGTTCATTGGTGTCCATTTGGCAGCCTAGCACGACTTC CTTCATCCTTTGAGGAAGGGGAATTTTCATCAAATGCATATCATGATTTACTGGGACAACATCCCATATTTGGCGAACATACCGCAGCAGTATCATCTGC TACTCATCCTTGCCCATATATTGCTTATTTTGGACCAATTCACCCATCATCTTCGAACTCCAGTGGCAGTGTTTCAGATGTTTCTAGTTTTAACAGTCAC TGGAATGGTCCATCAGTACCTAGTGAGATCCCTAGTTCCTATGCTTTTCCTGCCATGGATGTCCATTATCACAGTTGGGAGCACCATTCTCCTCCCTTCT CTACGACGGGCAATCGAATAGGTAATGCAGATCAGCCTTCTGTTCCACCTGTTACTCAAAGGTCGGCTAGAACTTCTTCAGATCTTCCACCAAGATCAGG ATCTTTCATTCATCCATTCCTTGTTGGTCATGGTTCTAGTGCTAGACCAGGGAGTTCAGTTACTTCCTCAATGATTCCACCTTACCAGGGCAGTAACGCA CGAGCACGTGATAGAGTTCAGGCCCTTCAAGCATACTATCAACAACTACAGCCTGGCAATTCTCCACCTATTCGCACACCAGTTGTTTCTGGAAGCCGAA GGTCCAGCAGTCATAGAGGCATGTCCCAGGTAGGAGCAGTGGCCTCATCATCCGATCAGACTGGCTTCTATTTCATTCCATCAGGAGCATCAGGTCGGAA CTTCCAAGAAGCAGAAAATCCTCCTCCGCCAACTCGATTCCGTTCATGGGAAAGAGATCATTTGCCATCATTCTCATTAAATCAGGTTGACAGAGATTCA GGTTGGAGCACATTCCATCAGGCTGGTGGTGGTCCAGATCCCGGCATCAGATTCCGCCAAAGGCATGGATCCGAGAGAATGTCATCACAAAATCGGTGA
AA sequence Show only first row Show all	>Potri.013G015600.1 pacid=42812294 polypeptide=Potri.013G015600.1.p locus=Potri.013G015600 ID=Potri.013G015600.1.v4.1 annot-version=v4.1 MGLGNSENDVIVDDGDGGGGGGGLNGKSFGGSVSCSICLEVVADNGDRSWAKLQCGHQFHLDCIGSAFNVKGAMQCPNCRKIEKGQWLYANGCRSLPEFS MDDWAHDEDLYDLSYSEMSFGVHWCPFGSLARLPSSFEEGEFSSNAYHDLLGQHPIFGEHTAAVSSATHPCPYIAYFGPIHPSSSNSSGSVSDVSSFNSH WNGPSVPSEIPSSYAFPAMDVHYHSWEHHSPPFSTTGNRIGNADQPSVPPVTQRSARTSSDLPPRSGSFIHPFLVGHGSSARPGSSVTSSMIPPYQGSNA RARDRVQALQAYYQQLQPGNSPPIRTPVVSGSRRSSSHRGMSQVGAVASSSDQTGFYFIPSGASGRNFQEAENPPPPTRFRSWERDHLPSFSLNQVDRDS GWSTFHQAGGGPDPGIRFRQRHGSERMSSQNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05545			RING/U-box superfamily protein...		Potri.013G015600 [exp]	0	1
AT5G13810			Glutaredoxin family protein (....		Potri.001G026600 [exp]	7.68	0.6327
AT1G01230			ORMDL family protein (.1)		Potri.014G101000 [exp]	9.89	0.6311
AT2G40980			Protein kinase superfamily pro...		Potri.010G173100 [exp]	15.74	0.5806
AT1G34220			Regulator of Vps4 activity in ...		Potri.013G117100 [exp]	22.18	0.6113
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G263500 [exp]	24.85	0.6300	CIPK25.1
AT3G28920	ZF_HD	ATHB34, ZHD9	ZINC FINGER HOMEODOMAIN 9, hom...		Potri.017G082900 [exp]	25.65	0.5645
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.006G200200 [exp]	29.93	0.5930
AT1G68140			Protein of unknown function (D...		Potri.003G021800 [exp]	34.04	0.5535
AT2G11890			adenylate cyclases (.1.2)		Potri.003G198200 [exp]	47.13	0.5732
AT2G10950			BSD domain-containing protein ...		Potri.018G125400 [exp]	47.62	0.5457

Compare expression of checked genes

Potri.013G015600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.