Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27190 268 / 4e-74 NB-ARC domain-containing disease resistance protein (.1) AT4G27220 260 / 7e-72 NB-ARC domain-containing disease resistance protein (.1) AT4G26090 227 / 5e-61 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G12210 198 / 1e-51 RFL1 RPS5-like 1 (.1) AT1G61180 191 / 2e-49 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT5G63020 186 / 7e-48 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G61190 186 / 1e-47 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12280 184 / 3e-47 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61310 177 / 5e-45 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G63350 177 / 6e-45 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G015700 [exp] 2883 / 0 AT4G27190 257 / 2e-70 NB-ARC domain-containing disease resistance protein (.1) Potri.005G041101 [exp] 1578 / 0 AT4G27220 229 / 2e-61 NB-ARC domain-containing disease resistance protein (.1) Potri.005G042400 [exp] 1569 / 0 AT4G27220 234 / 4e-63 NB-ARC domain-containing disease resistance protein (.1) Potri.005G042900 [exp] 1546 / 0 AT4G27190 240 / 7e-65 NB-ARC domain-containing disease resistance protein (.1) Potri.013G027300 [exp] 1151 / 0 AT4G27190 244 / 8e-66 NB-ARC domain-containing disease resistance protein (.1) Potri.005G062130 [exp] 1142 / 0 AT4G27220 256 / 5e-70 NB-ARC domain-containing disease resistance protein (.1) Potri.005G061860 [exp] 1115 / 0 AT4G27220 230 / 1e-61 NB-ARC domain-containing disease resistance protein (.1) Potri.019G036875 [exp] 1041 / 0 AT4G27190 178 / 9e-45 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426200 [exp] 485 / 1e-145 AT4G27190 288 / 1e-80 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039509 [exp] 109 / 2e-23 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 107 / 5e-23 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 104 / 6e-22 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 102 / 2e-21 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 99 / 3e-20 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002247 [exp] 97 / 9e-20 AT5G36930 363 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10026132 [exp] 96 / 1e-19 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10018937 [exp] 95 / 3e-19 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 94 / 7e-19 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10022792 [exp] 91 / 6e-18 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05729 [poplar] [flax] NACHT NACHT domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.013G015900.4 pacid=42812086 polypeptide=Potri.013G015900.4.p locus=Potri.013G015900 ID=Potri.013G015900.4.v4.1 annot-version=v4.1 ATGGGGTTGTTCCCTAATGTGACGAGGCGCTACAAGTTTAGTACAAAGATAGAGAGTATTGCAGAGGAGGTTGTTAAGATCAATCATCGAGGCAGATTTG ATAGGGTGTCCTACCTTCCTGCTCGACGCGGGATAGGGGACAGATCTCTAAAAGATTACGAGGCTTTCGAATCAAGAAGACCTGTTTTGGATGAAATTTT GGAGGCCTTAAAAGATGATGATGTCGACCTAGTTGGAGTGTATGGGATGGCTGGTGTAGGCAAGACCACACTTGTGAAAAAGGTTGCTGAACAAGTCAAG GCGGGCAGGATTTTTGATGTGGTGGTTCAGGCTGTTGTATCTCAGACTCCTAACCTGAGAAAAATTCAGGGGGAAATAGCAGATAAGCTAGGTCTCAAAT TGGATGCAGAGACTGACAGTGGAAGAGCAGATTTCTTGTACGAGAGGCTTAAAAGAGAGACAAAGGTACTTGTGATTTTGGATGACATTTGGGAGAGGCT TGAACTAGATGATGTGGGGATTCCTTCTGGTAGTGATCATCGGGGATGCAAAATATTGATGACATCGAGAGATCGAAATGTATTATCCCGTGGAATGGTT ACAAAAAAAGTTTTCTGGCTTCAAGTTTTACCCGAGAATGAAGCATGGAATCTGTTTAAGAAGACGGCGGGTGATGTTGTCAAATATCCCGATCTGCAGC TTGTTGCTGTAGAAGTAGCCAAAAGATGTGCTGGTTTGCCCATTTTAATAGTTACTGTTGCGAGGGCATTAAAAGATGGGAAACTGTCAGAGTGGAAGGA TGCTTTGGTAAGGCTGAAAAGATTTGACAAGGATGAAATGGATAGCCGAGTTTGCTCAGCTCTAGAGTTGAGCTACGATTCTTTGAAAGGAGAAGAAATC AAGTCAGTATTCTTACTTTGTGGACAACTTGAACCTCACAGCATTGCAATCCTTGACTTACTGAAATATACCGTTGGCCTGGGATTGTTTAAACGTATCA GTACATTGGAAGAAGCAAGAAATAGACTACATAGATTGGTCAATGACCTCAAAGCCTCTTGTTTGTTGCTAGAAGGTGGCGCAGATGGAATAGTCAAAAT GCATGATGTTGTTCATGGTTTTGCTGCCTTTGTAGCTTCCAGGGATCATCATGTCTTCACATTAGCATCTGGCACTGTATTAAAAGAATGGCCGGCTATG CTTGAACAGTGCAGTGCTATCTCTTTGCCGCGTTGCAAAATTCCTGGACTTCCTGAAGTACTGAACTTTCCAAAAGCTGAGTCGTTTATACTGTATAATG AAGACCCCTCGCTCAAAATCCCAGACAGTCTGTTTAAGGGAACACAAACTCTCCAACTTGTGGATATGACAGCTGTGCAACTTCCAACACTACCTTCCTC ACTTCAATTTCTCGAAAAGCTTCAAACATTGTGTCTGGATAGTTGTGGTTTGAAAGATATAGCTATGATCGGAGAGCTAAAGATGTTAAAAGTTCTCAGC TTAATAGGCTCTAACATTGTTCGGCTGCCGAGAGAAATTGGGCAGTTGACTCGTCTGCAACTTCTGGATTTGAGTAACAATCCAAGGCTTGAAATGATTC CGCCAAATGTGCTGTCATGCTTGACCCAACTAGAGGACTTGTACATGGAGAACAGCTTTTTGCAATGGAGGATTGAAGGACTAGATAGTCAAAGAAACAA TGCTAGCCTGGCTGAGCTGAAATATCTGCCAAATCTAAGCACTTTATACTTGCACATTACAGATCCTATGATTCTTCCCAGAGACTTCTTCTCCAAAAAA TTGGAAAGATTTAAAATTTTGATCGGAGAAGGGTGGGACTGGTCCAGGAAGCGTGAAACTTCAACAACAATGAAATTGAAGATCAGTGCAAGCATTCAAT CGGAGGAGGGGATCCAACTGTTGCTGAAGAGAACTGAAGATCTACATTTAGATGGACTAAAGGGTGTTAAAAGTGTTTCCTATGAATTAGATGGGCAAGG TTTTCCTCGTTTGAAGCATCTCCATATCCAAAATAGTCTTGAGATTCGATATATTGTCGACTCGACTATGTTAAGTCCTTCTATTGCTTTTCCACTCCTG GAGTCTTTGTCTCTTGACAATTTGAATAAGTTGGAGAAGATTTGTAATAGTCAACCTGTGGCGGAGTCATTTAGCAACTTGAGAATTTTGAAGGTGGAAA GTTGTCCAATATTGAAGAATCTTTTTTCGTTGCACATGGAAAGAGGCCTTTTGCAACTGGAACATATCAGCATAATTGATTGCAAAATCATGGAAGTGAT TGTTGCTGAGGAAAGTGGAGGCCAAGCTGACGAAGATGAAGCAATCAAGTTGACTCAACTACGAACACTGACACTGGAATATCTACCCCAATTCACAAGC GTTTCCTCAAAATCGAATGCAGCTTCCATATCACAGACCAGGCCGGAGCCGTTAATCACTGATGTCGGGTCCAATGAAATTGCATCTGACAATGAGCTCG GGACTCCCATGACACTTTTTAACAAAAAGATTGAATTCCCTAGTTTGGAAGACCTAAAACTGTCCTCTATCAAAGTTGAGAAGATATGGCAAGACCAACC AGGAGAACTGTCCTATTGGTTTCCGAGATTAACAAGTTTGATAGTCGAGGGCTGTGGAAATCTAAAGTATTTATTTACTTCTTCTATGGTTGAAAGTCTT GCTCAACTCAAAAGGCTTGAGCTACGTGATTGCACGCCTATGGAAGAAATAATAATTAAGAACGGATTAAGAGAAGAAGAAAATGTGAGAGGAATAATGT TTCCAAAGCTACAATTCCTCAAGCTTAAGGGCCTTTTAAATCTCACAAGATTCTGCACCAGTCACCTAATCGAATGCTACTCCTTGAAAGAACTGCGGAT AGAGAATTGCCCTGCACTGAAGACCTTCATCTCTAATTCATTAAGCACAGATGCAGTAGCCAACAATCAATTTGAAGAAACAAACTCAACTCTCTTTGAT GAAAAAGTTTCATTCTCTAACATAGAGAAACTGCACATTCTTGGCATGGATAATTTGAATATGATATGGCACACTGAATTCCATTCAGATTCCTTTTGCA AGCTCAAGGCGCTGAAGGTAAAACAAGCAAACAAATTGTTGAATATTTTCCCACCCAATATGCTGAGAAGATTCCATAATTTAGACAACCTGGAGGTAGA TGATTGTTCTTCACTGGAAGAGGTGTTTGATCTCAGATCTCTGATGAATGAAAAAGATTCCCATGCTGTAACAGCGTTTAAGTTGAGAGATATGTATGTA GGGAACCTGCCAAATTTGAAGAAAGTGTGGAATACAAATCCTCATGGAATTCTCTCTTTTCAAAACCTTCATTTAGTGAATGCTTGGAATTGTCCAAGTC TAAAAAGCCTCTTCCCAACCTCTGTAGCCTTAGGCCTTTCACAACTCGAAAAGCTTCAACTAACTAGTTGTGGAGTGGAGGAAATTGTTGCTGAGGAAGA AAGACTAGGAGAAGAACTAGAGTTTGTTTTTCCTAAAACAACCTCTTTCATTCTCTGGCAATTGCCCAAACTCAAGAGTTTCTACCCAGGAAGACACACT TCAGAGTGGCCGGTTTTAAAGAAAATAGACGTGTATCATTGCCACGAAGTGCCGGTATTTGATTCGGAGCTCCAGAGCACCCAAGGAGCTTGTACACAGG ACCAACTTGAGATCCAAGTTCAGCAACCGCTTTTCTCATTTGAAAAGATCATCCCCAACTTGGAAGAACTATCGCTAAACAGTAAAGATGCAGCAAAGGT ATGTCAAGGCCAGTTTCCAGCAGACCTCTTTCACAAAATAAGAGTTCTTGAGCTGCAATGCTTTCATGATGCATCGGCTGAATTTCCATTTGGTATCATG CATAGATTCCAGAATATGGAAAAGCTTCTTGTAACTCATGGTTATTTCAAAGAGCTGTTCCCATGTCGACTTGTTGATGAGGAGGAACATACTCTTGCTA GGATACTGTACTTGAAACTTTTTAATCTTCCAGATTTGGAGAAAATTTGGAACCAAGATCTCCAAGTGGACCAGCTTCTTCAAAATCTTGGAACTCTGGA AGTAAGGAGTTGTGACAGTTTGATCAATTTAGCACCATCTGCATCATCTTTCGGAAATCTAACAGCTTTGCATGTATGGGATTGCGAAGCATTGAAATAC TTGGTCACATCCTCAACTGCCAGAAGTCTTGTGCAACTCTCTGCAATGAGTATAAAGGAATGCAAAATGGTGACAGAAATTGTAGCAAGCAAGGGAGATG AAGCAGGAAATGAGATCATTTTCTGGAAATTGGAAAGTCTGAAACTTGATTGTTTAGCAAGCCTCACTAGCTTTTGCTCTATAAATTTCACCTTCAAATT CCCCTCTTTGACAGAAGTAATTGTGACAAATTGTCCAAAGATGAAGACTTTTTCCCCGGGAATAAGCACACCAAAGCTGCAGAAAGTATGGCTATCAGAA GAAAAGGACAAAGGACATTGGGAACGCGACCTTAACATCACCATTCAACAGCTCTCTGTATAA
AA sequence Show only first row Show all	>Potri.013G015900.4 pacid=42812086 polypeptide=Potri.013G015900.4.p locus=Potri.013G015900 ID=Potri.013G015900.4.v4.1 annot-version=v4.1 MGLFPNVTRRYKFSTKIESIAEEVVKINHRGRFDRVSYLPARRGIGDRSLKDYEAFESRRPVLDEILEALKDDDVDLVGVYGMAGVGKTTLVKKVAEQVK AGRIFDVVVQAVVSQTPNLRKIQGEIADKLGLKLDAETDSGRADFLYERLKRETKVLVILDDIWERLELDDVGIPSGSDHRGCKILMTSRDRNVLSRGMV TKKVFWLQVLPENEAWNLFKKTAGDVVKYPDLQLVAVEVAKRCAGLPILIVTVARALKDGKLSEWKDALVRLKRFDKDEMDSRVCSALELSYDSLKGEEI KSVFLLCGQLEPHSIAILDLLKYTVGLGLFKRISTLEEARNRLHRLVNDLKASCLLLEGGADGIVKMHDVVHGFAAFVASRDHHVFTLASGTVLKEWPAM LEQCSAISLPRCKIPGLPEVLNFPKAESFILYNEDPSLKIPDSLFKGTQTLQLVDMTAVQLPTLPSSLQFLEKLQTLCLDSCGLKDIAMIGELKMLKVLS LIGSNIVRLPREIGQLTRLQLLDLSNNPRLEMIPPNVLSCLTQLEDLYMENSFLQWRIEGLDSQRNNASLAELKYLPNLSTLYLHITDPMILPRDFFSKK LERFKILIGEGWDWSRKRETSTTMKLKISASIQSEEGIQLLLKRTEDLHLDGLKGVKSVSYELDGQGFPRLKHLHIQNSLEIRYIVDSTMLSPSIAFPLL ESLSLDNLNKLEKICNSQPVAESFSNLRILKVESCPILKNLFSLHMERGLLQLEHISIIDCKIMEVIVAEESGGQADEDEAIKLTQLRTLTLEYLPQFTS VSSKSNAASISQTRPEPLITDVGSNEIASDNELGTPMTLFNKKIEFPSLEDLKLSSIKVEKIWQDQPGELSYWFPRLTSLIVEGCGNLKYLFTSSMVESL AQLKRLELRDCTPMEEIIIKNGLREEENVRGIMFPKLQFLKLKGLLNLTRFCTSHLIECYSLKELRIENCPALKTFISNSLSTDAVANNQFEETNSTLFD EKVSFSNIEKLHILGMDNLNMIWHTEFHSDSFCKLKALKVKQANKLLNIFPPNMLRRFHNLDNLEVDDCSSLEEVFDLRSLMNEKDSHAVTAFKLRDMYV GNLPNLKKVWNTNPHGILSFQNLHLVNAWNCPSLKSLFPTSVALGLSQLEKLQLTSCGVEEIVAEEERLGEELEFVFPKTTSFILWQLPKLKSFYPGRHT SEWPVLKKIDVYHCHEVPVFDSELQSTQGACTQDQLEIQVQQPLFSFEKIIPNLEELSLNSKDAAKVCQGQFPADLFHKIRVLELQCFHDASAEFPFGIM HRFQNMEKLLVTHGYFKELFPCRLVDEEEHTLARILYLKLFNLPDLEKIWNQDLQVDQLLQNLGTLEVRSCDSLINLAPSASSFGNLTALHVWDCEALKY LVTSSTARSLVQLSAMSIKECKMVTEIVASKGDEAGNEIIFWKLESLKLDCLASLTSFCSINFTFKFPSLTEVIVTNCPKMKTFSPGISTPKLQKVWLSE EKDKGHWERDLNITIQQLSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27190			NB-ARC domain-containing disea...		Potri.013G015900 [exp]	0	1
AT4G27190			NB-ARC domain-containing disea...		Potri.013G015700 [exp]	3.00	0.9738
AT3G42670		CLSY1, CLSY, CH...	CLASSY 1, CLASSY1, chromatin r...		Potri.008G073500 [exp]	3.46	0.8612
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Potri.005G210300 [exp]	3.74	0.8356
AT1G63500			Protein kinase protein with te...		Potri.003G126700 [exp]	4.47	0.8602
AT5G14210			Leucine-rich repeat protein ki...		Potri.012G095600 [exp]	7.34	0.7889
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170232 [exp]	8.12	0.8572
AT1G72890			Disease resistance protein (TI...		Potri.011G012901 [exp]	9.00	0.8534
AT3G14460			LRR and NB-ARC domains-contain...		Potri.014G005400 [exp]	10.48	0.8477
AT5G27550			P-loop containing nucleoside t...		Potri.005G031500 [exp]	12.00	0.8398
AT5G53020			Ribonuclease P protein subunit...		Potri.015G012000 [exp]	12.72	0.8253

Compare expression of checked genes

Potri.013G015900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.