Plant FIBer expression Database

Potri.013G016350 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G21280 56 / 1e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G127101
[exp]
134 / 4e-36 AT1G21280 75 / 8e-16 unknown protein
Potri.001G247404
[exp]
133 / 9e-35 AT1G21280 84 / 2e-18 unknown protein
Potri.013G092801
[exp]
81 / 7e-17 AT1G21280 76 / 7e-16 unknown protein
Potri.002G228101
[exp]
56 / 3e-09 ND /
Potri.004G133001
[exp]
47 / 8e-06 AT1G21280 46 / 6e-06 unknown protein
Potri.012G007800
[exp]
49 / 9e-06 AT2G25440 227 / 1e-62 receptor like protein 20 (.1)
Potri.005G161366
[exp]
43 / 0.0002 ND /
Potri.006G109250
[exp]
43 / 0.0002 AT1G21280 52 / 6e-08 unknown protein
Potri.001G150101
[exp]
42 / 0.0003 ND /
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0523 GAG-polyprotein PF14244 Retrotran_gag_3 gag-polypeptide of LTR copia-type
Representative CDS sequence
>Potri.013G016350.1 pacid=42811736 polypeptide=Potri.013G016350.1.p locus=Potri.013G016350 ID=Potri.013G016350.1.v4.1 annot-version=v4.1
ATGGATGACACAAATACTTCTATTATCCCCATAAACCAGACATCAATCTCTGCTGAAACACCTAACCTAAACACCTTACCCTTTGGATTTAAATTGAATG
AGACAAACTTCAAAAACTGGTCACGTATGCTTGAACTGCACGCTGCTGGATTGAACAAACTTGGCTACTTAACTGGGCAGAATGCTAGAGTGGAAGAAGG
AAATTCTGGTTACTCAAAGTGGTGTACTGAAGATGCAGTGCCTCATCTTATTGGTTTATTTATAGACCTGTCATCAGCCAAGGAAATCTGGGATAATGTC
ACTCAAACCTTCTATGATGGGGCTGACGAGTCGCAATTCTATGAGCTATGCTGCAAAGCCACAAGGACGAAACAGAATGGGCGTCCAGTTAACTTGTATT
ACGCAGAGCTGAATAGTGTATGGCAGGAAATTGATAAGCGACGACCAATTAAGATGATATGTGCTGCAGATCTTAGAACCAGACAAGAAGAAATTCAAAA
GGACCGGATCTATAACTTTCTCGCAAGTTTGGATGAAGTTTTTGATTCAATACGCAGTGATCTCCTTCGTAAAAAATCTGTTCCAAGTATTGAAGAGTGC
TTCAATACAATTCGACGGGAGGCTCAGCGACAAGTCACCATACTAGGAGCAAAGAAAACTAGTGAAGGATCATCAATTGCAATGATTTCGAAATCCACCA
CCCCTTCTAACTTACGCACTTTTCGAGCTATTGAGGAAGCAGAAAAAGATAAGTTGCACTGCAGCTATTGTAATGGAAGTCGCCATACCAGAGACACTTG
TTTTGAGATTCATGGCTACCCTGACTGGTTTCTAGAAAAACGGAAGCAAAGTAAAGCAAAAAGCAATAAACGTCCAGTCCAAGCAAAATTAACCACTGCA
ACAGAAATTCCTTCAAGTTTTGCTGCCATGGAAATAAGCCAAAAAGACCATACTAAACCGGGTGAATTACTCTCCCTAGCAAAAACTTACCAGGCTTCAG
TGACAGGTAAAACTGGTGTGGTTTTGTCAACATCCACGGTTCATGAAACAGGTTGGATCATTGACTCGGGTGCCACAGATCATATGACTTATAACAAATC
ATTATTTCAATACATGACTCCCCCGTCTAAGGAAAAAGTCATGACAGCCAATGGGGAGTCTACCCCAGTCATTGGAGCAGGATCAATTGTTCTCACTCCT
AATCTTTCACTATATAATTGTTTACTTGTCCCTGCACTTTCAAATCATTTATTGTCTGTTAGTCAAATTACAGAAGAATTGGATTGTGTGGATATCCAGA
CTCAATCGATCATTGGACGTGGTACTAAGAGGAAGGGATTTCATCCCTCATATACTTAG
AA sequence
>Potri.013G016350.1 pacid=42811736 polypeptide=Potri.013G016350.1.p locus=Potri.013G016350 ID=Potri.013G016350.1.v4.1 annot-version=v4.1
MDDTNTSIIPINQTSISAETPNLNTLPFGFKLNETNFKNWSRMLELHAAGLNKLGYLTGQNARVEEGNSGYSKWCTEDAVPHLIGLFIDLSSAKEIWDNV
TQTFYDGADESQFYELCCKATRTKQNGRPVNLYYAELNSVWQEIDKRRPIKMICAADLRTRQEEIQKDRIYNFLASLDEVFDSIRSDLLRKKSVPSIEEC
FNTIRREAQRQVTILGAKKTSEGSSIAMISKSTTPSNLRTFRAIEEAEKDKLHCSYCNGSRHTRDTCFEIHGYPDWFLEKRKQSKAKSNKRPVQAKLTTA
TEIPSSFAAMEISQKDHTKPGELLSLAKTYQASVTGKTGVVLSTSTVHETGWIIDSGATDHMTYNKSLFQYMTPPSKEKVMTANGESTPVIGAGSIVLTP
NLSLYNCLLVPALSNHLLSVSQITEELDCVDIQTQSIIGRGTKRKGFHPSYT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G21280 unknown protein Potri.013G016350
[exp]
0 1
AT4G24340 Phosphorylase superfamily prot... Potri.013G100700
[exp]
8.06 0.7696
AT2G23210 UDP-Glycosyltransferase superf... Potri.009G095550
[exp]
8.48 0.7894
AT2G23060 Acyl-CoA N-acyltransferases (N... Potri.005G146100
[exp]
11.48 0.7478 HLS1.1
AT4G24340 Phosphorylase superfamily prot... Potri.013G100800
[exp]
11.95 0.7467
AT5G64410 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPT... Potri.009G079500
[exp]
15.39 0.5815
AT5G24910 ELA1, CYP714A1 EUI-like p450 A1, cytochrome P... Potri.010G116300
[exp]
15.49 0.6493
AT1G55230 Family of unknown function (DU... Potri.003G216500
[exp]
15.87 0.7644
Potri.006G120650
[exp]
16.49 0.7633
Potri.005G006000
[exp]
16.61 0.6912
AT3G26040 HXXXD-type acyl-transferase fa... Potri.007G139400
[exp]
16.97 0.7370

Potri.013G016350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.