Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27730 669 / 0 Protein of unknown function (DUF1624) (.1) AT5G47900 356 / 3e-119 Protein of unknown function (DUF1624)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G025200 [exp] 778 / 0 AT5G27730 595 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.006G122500 [exp] 594 / 0 AT5G27730 521 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.014G123800 [exp] 403 / 4e-137 AT5G47900 442 / 1e-152 Protein of unknown function (DUF1624) Potri.001G071500 [exp] 380 / 1e-128 AT5G47900 519 / 0.0 Protein of unknown function (DUF1624) Potri.003G159200 [exp] 367 / 2e-123 AT5G47900 492 / 1e-172 Protein of unknown function (DUF1624) Potri.004G176400 [exp] 347 / 6e-116 AT5G47900 400 / 2e-137 Protein of unknown function (DUF1624) Potri.009G136700 [exp] 337 / 6e-112 AT5G47900 395 / 2e-135 Protein of unknown function (DUF1624)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020653 [exp] 683 / 0 AT5G27730 624 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10021514 [exp] 533 / 0 AT5G27730 540 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10022615 [exp] 530 / 0 AT5G27730 532 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10010030 [exp] 410 / 9e-140 AT5G47900 433 / 2e-149 Protein of unknown function (DUF1624) Lus10027468 [exp] 303 / 7e-99 AT5G47900 380 / 9e-130 Protein of unknown function (DUF1624) Lus10039223 [exp] 301 / 1e-98 AT5G47900 349 / 1e-117 Protein of unknown function (DUF1624) Lus10019798 [exp] 268 / 8e-86 AT5G47900 329 / 5e-110 Protein of unknown function (DUF1624) Lus10036333 [exp] 241 / 1e-76 AT5G47900 269 / 6e-89 Protein of unknown function (DUF1624) Lus10014112 [exp] 218 / 7e-66 AT5G47900 237 / 4e-74 Protein of unknown function (DUF1624) Lus10000090 [exp] 154 / 4e-44 AT5G47900 174 / 5e-54 Protein of unknown function (DUF1624)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0316 [poplar] [flax] Acyl_transf_3 PF07786 [poplar] [flax] DUF1624 Protein of unknown function (DUF1624)
Representative CDS sequence Show only first row Show all	>Potri.013G016900.2 pacid=42812156 polypeptide=Potri.013G016900.2.p locus=Potri.013G016900 ID=Potri.013G016900.2.v4.1 annot-version=v4.1 ATGGCCGAAATTAAGGCCGATATTGCTTTAGACCACCGGCTGACAATTGCTGAGGTAACCGATATCTCAGCCCAAAAGCCTGACCCGAAAATTCGTGTAG CTTCGTTAGATATCTACAGAGGCCTCACTGTTGCTTTAATGATCTTGGTTGATGATGCTGGAGGAGAATGGCCTAAGATTGGACATGCACCATGGAATGG TTGTAACCTTGCCGACTTCGTAATGCCTTTCTTTTTATTCATAGTAGGAATGGCCATTCCTCTTGCTTTTAAGAGAATTACAAGCCGGCACCATGCTGTC AAGAGGGTGATTGTTAGAACTTTGAAACTGCTATTCTGGGGTATCATGTTACAAGGGGGCTTCTCCCATGCTCCTGACAAACTTACTTATGGAGTTGACA TGAAGAAGATAAGATGGTGTGGGATTCTTCAGAGAATTGCTTTTGCTTACTTAGTAGTGGCACTGATGGAAATATTTACAAAAAAAAAGCAAACCAGGGA GCTACCACCTGGATGGCTCTCCATTTACAAGCTATATAGCTCGCAATGGCTGATGGGAGCATGTATACTTGTTATTTACCTGGCTGTAATCTACGGGACT TACGTGCCTCACTGGCAGTTCACTGTCAATGATAGAGACAGTGCTGATTATGGGAAGGTTTTCACTGTAGAGTGTGCTGTCAGAGGAAAACTGAATCCTC CTTGTAATGCAGTTGGTTTCATCGACAGAGAAATTTTAGGAATCAATCACATGTATCAGCATCCAGCTTGGAAGAGATCTGAGGCCTGCACGGAGAATTC CCCATATGAGGGGCCTTTCCGAACCAGTGCTCCGTCGTGGTGCAAAGCTCCTTTTGAACCTGAAGGAATCCTAAGCTCAATATCTGCAGTTCTTTCAACC ATCATTGGAGTTCATTTTGGACATGTGCTTGTATATATGAGGGGTCATGCAGCTAGACTGAAGCATTGGATTGTGATGGGATTTGCCCTTCTTATTTCAG GGCTTGTTCTTCATTTCACACATGCGATTCCCTTAAATAAGCAACTATACACTTTCAGCTATGTTTGTGTAACATCCGGAGCAGCAGCATTGGTGTTTTC ATCCATCTACGCCCTGGTTGATATTTGGGGTTGGAAGTGCGTCTTTCAGCCACTAGCATGGATTGGCATGAACGCAATGCTTGTTTATGTCATGGCTGCT GAAGGCATCTTTGCTGGTTTCATCAATGGGTGGTACTACAATGATCCTCACAATACACTGATATACTGGATTCAAAAGCATATTTTTATAGGAGTTTGGC ATTCTCAAAGAGTTGGCATTCTACTTTATGTTATCTTTGCAGAGATCCTCTTCTGGGGCATGGTTGCAGGCATTTTCCATCGCCTAGGAATTTACTGGAA GCTTTAA
AA sequence Show only first row Show all	>Potri.013G016900.2 pacid=42812156 polypeptide=Potri.013G016900.2.p locus=Potri.013G016900 ID=Potri.013G016900.2.v4.1 annot-version=v4.1 MAEIKADIALDHRLTIAEVTDISAQKPDPKIRVASLDIYRGLTVALMILVDDAGGEWPKIGHAPWNGCNLADFVMPFFLFIVGMAIPLAFKRITSRHHAV KRVIVRTLKLLFWGIMLQGGFSHAPDKLTYGVDMKKIRWCGILQRIAFAYLVVALMEIFTKKKQTRELPPGWLSIYKLYSSQWLMGACILVIYLAVIYGT YVPHWQFTVNDRDSADYGKVFTVECAVRGKLNPPCNAVGFIDREILGINHMYQHPAWKRSEACTENSPYEGPFRTSAPSWCKAPFEPEGILSSISAVLST IIGVHFGHVLVYMRGHAARLKHWIVMGFALLISGLVLHFTHAIPLNKQLYTFSYVCVTSGAAALVFSSIYALVDIWGWKCVFQPLAWIGMNAMLVYVMAA EGIFAGFINGWYYNDPHNTLIYWIQKHIFIGVWHSQRVGILLYVIFAEILFWGMVAGIFHRLGIYWKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27730			Protein of unknown function (D...		Potri.013G016900 [exp]	0	1
AT3G53170			Tetratricopeptide repeat (TPR)...		Potri.009G058300 [exp]	2.00	0.9286
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Potri.006G160300 [exp]	2.64	0.9395
AT5G07900			Mitochondrial transcription te...		Potri.010G022700 [exp]	2.64	0.9058
AT1G03670			ankyrin repeat family protein ...		Potri.018G078450 [exp]	3.00	0.9237
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Potri.007G008500 [exp]	3.46	0.9224	XTH2.2
AT5G50915	bHLH	bHLH137	basic helix-loop-helix (bHLH) ...		Potri.012G104900 [exp]	4.24	0.9042
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Potri.008G067500 [exp]	4.89	0.8918
AT3G06880			Transducin/WD40 repeat-like su...		Potri.012G118600 [exp]	6.48	0.8928
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.013G034400 [exp]	6.92	0.9006
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072300 [exp]	7.34	0.8905

Compare expression of checked genes

Potri.013G016900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.