Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09130 448 / 3e-159 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT1G49970 162 / 2e-46 SVR2, NCLPP5, CLPR1 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) AT4G17040 153 / 5e-44 HON5, CLPR4 happy on norflurazon 5, CLP protease R subunit 4 (.1) AT5G23140 129 / 2e-35 NCLPP7, NCLPP2, CLPP2 nuclear-encoded CLP protease P7 (.1) AT1G02560 109 / 2e-27 NCLPP5, NCLPP1, CLPP5 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) AT1G11750 105 / 2e-26 NCLPP6, NCLPP1, CLPP6 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) AT5G45390 105 / 5e-26 NCLPP3, NCLPP4, CLPP4 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) AT1G66670 101 / 2e-24 NCLPP3, NCLPP4, CLPP3 CLP protease proteolytic subunit 3 (.1) AT1G12410 98 / 2e-23 EMB3146, CLP2, NCLPP2, CLPR2 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) ATCG00670 76 / 3e-16 PCLPP, ATCG00670.1, CLPP1 CASEINOLYTIC PROTEASE P 1, plastid-encoded CLP P (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G089300 [exp] 157 / 9e-45 AT1G49970 459 / 7e-162 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) Potri.003G083300 [exp] 149 / 2e-42 AT4G17040 441 / 2e-157 happy on norflurazon 5, CLP protease R subunit 4 (.1) Potri.001G295266 [exp] 128 / 9e-36 AT1G49970 306 / 5e-105 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) Potri.005G092600 [exp] 122 / 8e-33 AT5G23140 380 / 3e-135 nuclear-encoded CLP protease P7 (.1) Potri.007G071700 [exp] 122 / 4e-32 AT5G23140 383 / 1e-135 nuclear-encoded CLP protease P7 (.1) Potri.004G092100 [exp] 112 / 3e-28 AT1G66670 441 / 2e-156 CLP protease proteolytic subunit 3 (.1) Potri.002G195200 [exp] 108 / 3e-27 AT1G02560 474 / 2e-170 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.014G119700 [exp] 108 / 4e-27 AT1G02560 493 / 6e-178 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.004G152900 [exp] 106 / 1e-26 AT1G11750 397 / 4e-141 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029891 [exp] 166 / 2e-46 AT3G05510 255 / 1e-79 Phospholipid/glycerol acyltransferase family protein (.1.2) Lus10003953 [exp] 140 / 9e-39 AT1G49970 318 / 8e-107 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) Lus10020990 [exp] 138 / 2e-37 AT1G49970 308 / 1e-102 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) Lus10020649 [exp] 135 / 2e-37 AT1G09130 151 / 4e-44 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Lus10017397 [exp] 127 / 1e-34 AT5G23140 394 / 1e-140 nuclear-encoded CLP protease P7 (.1) Lus10010196 [exp] 125 / 5e-34 AT5G23140 395 / 4e-141 nuclear-encoded CLP protease P7 (.1) Lus10040982 [exp] 112 / 1e-28 AT5G23140 338 / 5e-118 nuclear-encoded CLP protease P7 (.1) Lus10040981 [exp] 106 / 2e-26 AT5G23140 350 / 1e-122 nuclear-encoded CLP protease P7 (.1) Lus10011282 [exp] 105 / 8e-26 AT1G11750 300 / 2e-102 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Lus10040477 [exp] 104 / 9e-26 AT1G11750 305 / 2e-104 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [poplar] [flax] ClpP_crotonase PF00574 [poplar] [flax] CLP_protease Clp protease
Representative CDS sequence Show only first row Show all	>Potri.013G017166.2 pacid=42811780 polypeptide=Potri.013G017166.2.p locus=Potri.013G017166 ID=Potri.013G017166.2.v4.1 annot-version=v4.1 ATGGCAAGAACTTCTTGTTTTCAAGTAGTACTGCCTTTGACGACATGTTCATTGCCATCTTCAACTTTATATTCAAAATCAATTAAGCTAAAACCTAACA CCATCGACAACCTTAGAATCAAATGTTTTGCTTCAATTAATGCAAGAAATTCATCATCTTCTTCTAATATCCCTATGCCTCCAATAAACCCTAAAGACCC ATTTCTGTCGAAACTCGCTTCAATTGCTGCCACTTCTCCTGACTCTCTCCTTCAAGACAGCCCCGTCAGCGGTTCTGATACGCCGCCGTATCTTGACATC TTTGAGTCTCCCAAGCTCATGGCCACTCCTGCTCAGGTGGAAAGATCGGTGTCCTATAACGAGCATAGGCCAAGAACGCCTCCGCCTGATTTGCCCTCTT TGCTTCTACATGGAAGAATTGTTTACATTGGCATGCCTCTAGTGGCTGCTGTCACGGAGCTGGTTGTTGCAGAATTGATGTATTTGCAATGGATGGATCC AAAAGCACCAATTTATATCTATATTAATTCTACAGGAACAACCCGTGATGATGGTGAATCGGTTGGAATGGAGACAGAAGGTTTTGCTATCTATGATTCA ATGATGCAGTTAAAGAATGAGATACATACAGTTGCTGTAGGAGCTGCTATTGGCCAGGCTTGTCTTCTACTAGCTGCAGGAACAAAGGGTCACCGGTACA TGATGCCACATGCAAAAGCAATGATCCAACAGCCTCGTGTTCCATCATCAGGATTGATGCCTGCTAGTGATGTTCTTATTCGTGCTAAAGAGGCAGTAAT AAACAGGGATGTTCTAACAGAACTTCTGGCCAAGCACACCGGAAATTCAGTAGAGACTGTAGCTAATGTAATGAAGAGACCATTTTATATGGATTCTAGA AGAGCCAAAGAATTCGGGGTCATTGACAAAATTCTTTGGCAGGGTCAGGAAAAGATAATGGCAGATGTCTTGCCCCCAGAGGATTGGGACAAGTCAGCTG GCATTAAAGTTGCAGATCCCTTCTAG
AA sequence Show only first row Show all	>Potri.013G017166.2 pacid=42811780 polypeptide=Potri.013G017166.2.p locus=Potri.013G017166 ID=Potri.013G017166.2.v4.1 annot-version=v4.1 MARTSCFQVVLPLTTCSLPSSTLYSKSIKLKPNTIDNLRIKCFASINARNSSSSSNIPMPPINPKDPFLSKLASIAATSPDSLLQDSPVSGSDTPPYLDI FESPKLMATPAQVERSVSYNEHRPRTPPPDLPSLLLHGRIVYIGMPLVAAVTELVVAELMYLQWMDPKAPIYIYINSTGTTRDDGESVGMETEGFAIYDS MMQLKNEIHTVAVGAAIGQACLLLAAGTKGHRYMMPHAKAMIQQPRVPSSGLMPASDVLIRAKEAVINRDVLTELLAKHTGNSVETVANVMKRPFYMDSR RAKEFGVIDKILWQGQEKIMADVLPPEDWDKSAGIKVADPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09130			ATP-dependent caseinolytic (Cl...		Potri.013G017166 [exp]	0	1
AT1G68830		STN7	STT7 homolog STN7 (.1)		Potri.008G116800 [exp]	1.00	0.9889
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Potri.009G089300 [exp]	1.41	0.9876	Pt-CLPR1.1
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Potri.001G237800 [exp]	2.44	0.9871	ALB3.2
AT1G10830		Z-ISO1.2, Z-ISO...	15-cis-zeta-carotene isomerase...		Potri.014G146900 [exp]	2.44	0.9859
AT5G46420			16S rRNA processing protein Ri...		Potri.001G353800 [exp]	2.64	0.9850
AT2G46100			Nuclear transport factor 2 (NT...		Potri.002G162800 [exp]	2.82	0.9871
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.001G262400 [exp]	3.16	0.9867	RPL1.2
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Potri.011G021800 [exp]	3.74	0.9755
AT4G25370			Double Clp-N motif protein (.1...		Potri.012G129800 [exp]	4.47	0.9787
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Potri.010G207300 [exp]	4.89	0.9818

Compare expression of checked genes

Potri.013G017166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.