Plant FIBer expression Database

SRPP.2 (Potri.013G017300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol SRPP.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G05500 258 / 4e-87 Rubber elongation factor protein (REF) (.1)
AT2G47780 157 / 9e-48 Rubber elongation factor protein (REF) (.1)
AT1G67360 111 / 1e-29 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G025700
[exp]
363 / 2e-128 AT3G05500 277 / 1e-94 Rubber elongation factor protein (REF) (.1)
Potri.002G206000
[exp]
221 / 2e-72 AT3G05500 238 / 4e-79 Rubber elongation factor protein (REF) (.1)
Potri.001G055300
[exp]
122 / 5e-34 AT1G67360 249 / 1e-83 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2)
Potri.003G173100
[exp]
114 / 4e-31 AT1G67360 239 / 7e-80 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020648
[exp]
288 / 1e-98 AT3G05500 317 / 2e-110 Rubber elongation factor protein (REF) (.1)
Lus10029892
[exp]
285 / 1e-97 AT3G05500 317 / 3e-110 Rubber elongation factor protein (REF) (.1)
Lus10015171
[exp]
277 / 1e-94 AT3G05500 282 / 1e-96 Rubber elongation factor protein (REF) (.1)
Lus10031493
[exp]
276 / 8e-93 AT3G05500 285 / 4e-96 Rubber elongation factor protein (REF) (.1)
Lus10015786
[exp]
120 / 1e-30 AT1G67370 600 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
Lus10037019
[exp]
113 / 2e-28 AT1G67370 621 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05755 REF Rubber elongation factor protein (REF)
Representative CDS sequence
>Potri.013G017300.2 pacid=42811653 polypeptide=Potri.013G017300.2.p locus=Potri.013G017300 ID=Potri.013G017300.2.v4.1 annot-version=v4.1
ATGGCTGAAAATGATGTCAACATGCAACAGCAATTGGCTAGAGAGGAGGAAGAGAGGAGGCTGAAGTACTTGCAATTTGTGCAAGTGGCTGCAGTGCATG
CTGTGTTGACGTTCACGAACCTGTATATTTATGCCAAGGACAAGGCTGGTCCGTTGAAGCCTGGGGTGGAGACTGTTGAGGGGACGGTTAAGAGTGTTGT
TGGACTTGTTTATGATAAGTTTCGCGATGTTCCTATTGAAGTTCTCAAATTTGTTGATCGTAAGGTGGATGAATCTGTCACTAGTCTGGACACCCATGTG
CCCCCACTTGTCAAGCAGGTGTCATTCCAAGCCCTTTCAGCAGCTCAAAATGCTCCAGTGGCAGCTCGAGCAGTGGCTTCTGAAGTTCAGCGCTCTGGTG
TGAAAGGAACAGCCTCTGAATTGGCGAAAACTGTGTATGCCAAGTACGAGCCTACAGCCAAGGAACTCTACTCCAAGTACGAGCCGAAGGCGGAACAGGC
TGCTGTCTCTGCCTGGCGCAAGCTCAATAAGCTCCCCCTCTTCCCTCAAGTGGCCCAGGTGGTTGTGCCAACTGCAGCCTTTTGCTCTGAGAAGTACAAT
CAAACTGTTGTCAGCACAGCAGAGAAGGGATACAGGGTATCCTCATATTTGCCCCTGGTGCCTACTGAGAAGATTGCTAAGGTGTTTGGCGAAGTTCCAG
AATCAACCCCCTTGATTTCTAGCTAA
AA sequence
>Potri.013G017300.2 pacid=42811653 polypeptide=Potri.013G017300.2.p locus=Potri.013G017300 ID=Potri.013G017300.2.v4.1 annot-version=v4.1
MAENDVNMQQQLAREEEERRLKYLQFVQVAAVHAVLTFTNLYIYAKDKAGPLKPGVETVEGTVKSVVGLVYDKFRDVPIEVLKFVDRKVDESVTSLDTHV
PPLVKQVSFQALSAAQNAPVAARAVASEVQRSGVKGTASELAKTVYAKYEPTAKELYSKYEPKAEQAAVSAWRKLNKLPLFPQVAQVVVPTAAFCSEKYN
QTVVSTAEKGYRVSSYLPLVPTEKIAKVFGEVPESTPLISS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G05500 Rubber elongation factor prote... Potri.013G017300
[exp]
0 1 SRPP.2
AT1G61820 BGLU46 beta glucosidase 46 (.1.3) Potri.004G019366
[exp]
2.82 0.8683
AT3G63095 Tetratricopeptide repeat (TPR)... Potri.004G022700
[exp]
3.31 0.8976
Potri.010G084201
[exp]
3.46 0.8873
AT3G29320 PHS1 alpha-glucan phosphorylase 1, ... Potri.004G123600
[exp]
6.32 0.8014 PHO1.2
Potri.001G399050
[exp]
6.92 0.8870
AT1G78960 ATLUP2 lupeol synthase 2 (.1) Potri.004G015600
[exp]
8.36 0.8360 Pt-LCOSC2.7
AT3G50950 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.... Potri.011G129800
[exp]
10.19 0.8327
AT1G49390 2-oxoglutarate (2OG) and Fe(II... Potri.003G030400
[exp]
10.95 0.7851
AT5G06570 alpha/beta-Hydrolases superfam... Potri.006G198800
[exp]
11.66 0.7542
AT4G33040 Thioredoxin superfamily protei... Potri.006G226900
[exp]
13.67 0.8070

Potri.013G017300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.