Plant FIBer expression Database

Potri.013G017500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G05480 558 / 0 ATRAD9 cell cycle checkpoint control protein family (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020646
[exp]
569 / 0 AT3G05480 500 / 5e-176 cell cycle checkpoint control protein family (.1.2.3)
Lus10029894
[exp]
444 / 4e-154 AT3G05480 384 / 5e-131 cell cycle checkpoint control protein family (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0060 DNA_clamp PF04139 Rad9 Rad9
Representative CDS sequence
>Potri.013G017500.2 pacid=42811198 polypeptide=Potri.013G017500.2.p locus=Potri.013G017500 ID=Potri.013G017500.2.v4.1 annot-version=v4.1
ATGGAGTTGAGTCTCAGCGGAAACGCGCTGAAAACCTTCGCTCGCTCCATCACGTGCCTCTCACGTATCGGCAACGAGCTTGCTATCCAAGCTTCTCCTT
CTCAGCTTTCGCTCCACACGCTACATTCATCACGATCTGCGTACCAGTGTATTACATTTAAGGCGAGTTTCTTTGATGTGTATACAGTTTCCGGTACTGA
AGTCAAATTCAGTGTGCTTCTGAAGGCGATTTGTTCGGTTCTTAGGACGCCAATTGCAGGTGTTGATCATCTGAGTGTGCATTTGCCTGATCCGGATGCT
TCTAAAGTGAAATGGACTTTGGAATGCTTCAATGGTATTAGAAAATCCTATTGGATTACTTGCAATGTTGAGCCGGACATACAACATCTGTCTCTTGACA
GGAGAAGATATCCAAGCAGCTTAGTTGTGAGACCTCATGATCTTAACAGACTGCTTGCCAATTTTCAGTCATCACTCCAGGAGATCACCATCATTGCAAC
AGAACGTGCATCCATGGCTTCTGACACTGAAAATGAAATAGGAGGAAAAGCAGTTGAACTTCGAAGTTACATAGACCCAACCAAGGACAACGACTCTTCA
CTGCACACTCAGCTGTGGATAGATCCAGCTGAAGAATTTGTCCAGTATACTCACAGTGGAGACCCCGTGGATGTGACATTTGGTGTGAAGGAACTGAAGG
CATTTCTTTCTTTCTGCGAGGGTTGCGAAGTTGATATTCATTTATATCTTGAAAAGGCCGGGGAGCCTATTTTAATGGCACCAAAATTTGGTCTGGATGA
TGGATCCAGCTCAAACTTCGATGCTACTCTTGTACTTGCAACCATGCTTATATCACAGCTCCATGAAGGAAATCCACCAGAACCTCCACAAGCCACGGCA
CGTGGTGAGGCTGCAGATGGGACAGGGTCTCAAGGACAACAAGAGAGATGTGGAGTGAATGTATCTGAACATCCATCTGATCACACCAGAATTTGGTCTG
AACTTTCAGGAAGTGCAGCAAGAAGTGGTAGTGGTGGTGGTGCTGAAGCAAGGCAGGCTCCAGGAGAAAGAGACTTGAATGCTAATGAACAGAGGGAAAT
CCAAAGGATCAGCACAATGCATATATCCAAAGACACATCTGCTGGAGAAAATGTTGCTGTGAATCCTAGTCTCGGCCATCCTGTGCAAAAAGGTCATGCA
AAAGAAGCCCAAGAGAGATCAGAAACTGATGCCCATAGTTTTTCACAACGTCATCCTAGTAACTGGGTGGACGCTGATGAGGATGAGGATGATGATGGTG
ATGCAGATGGAAATGAATTGTGTGTTCAGTCAACACCGCCTTACTATGAAGAACAGTAG
AA sequence
>Potri.013G017500.2 pacid=42811198 polypeptide=Potri.013G017500.2.p locus=Potri.013G017500 ID=Potri.013G017500.2.v4.1 annot-version=v4.1
MELSLSGNALKTFARSITCLSRIGNELAIQASPSQLSLHTLHSSRSAYQCITFKASFFDVYTVSGTEVKFSVLLKAICSVLRTPIAGVDHLSVHLPDPDA
SKVKWTLECFNGIRKSYWITCNVEPDIQHLSLDRRRYPSSLVVRPHDLNRLLANFQSSLQEITIIATERASMASDTENEIGGKAVELRSYIDPTKDNDSS
LHTQLWIDPAEEFVQYTHSGDPVDVTFGVKELKAFLSFCEGCEVDIHLYLEKAGEPILMAPKFGLDDGSSSNFDATLVLATMLISQLHEGNPPEPPQATA
RGEAADGTGSQGQQERCGVNVSEHPSDHTRIWSELSGSAARSGSGGGAEARQAPGERDLNANEQREIQRISTMHISKDTSAGENVAVNPSLGHPVQKGHA
KEAQERSETDAHSFSQRHPSNWVDADEDEDDDGDADGNELCVQSTPPYYEEQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G05480 ATRAD9 cell cycle checkpoint control ... Potri.013G017500
[exp]
0 1
AT1G61900 unknown protein Potri.004G016000
[exp]
1.73 0.8835
AT3G07880 SCN1 SUPERCENTIPEDE1, Immunoglobuli... Potri.002G259200
[exp]
4.89 0.8586
AT4G16970 Protein kinase superfamily pro... Potri.003G082600
[exp]
11.48 0.8281
AT5G03330 Cysteine proteinases superfami... Potri.016G094700
[exp]
12.00 0.8260
Potri.003G070000
[exp]
14.00 0.8371
AT2G16950 ATTRN1 transportin 1 (.1.2) Potri.009G138200
[exp]
15.29 0.8504
AT2G39450 ATMTP11 Cation efflux family protein (... Potri.010G211300
[exp]
15.74 0.7941 PtrMTP11.1
AT5G40740 unknown protein Potri.001G337600
[exp]
16.24 0.7724
AT5G12920 Transducin/WD40 repeat-like su... Potri.001G016800
[exp]
17.17 0.8463
AT4G39630 unknown protein Potri.005G082500
[exp]
17.83 0.8416

Potri.013G017500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.