Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27690 115 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1) AT5G19090 95 / 3e-21 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT3G06130 90 / 8e-20 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G56210 89 / 2e-19 Heavy metal transport/detoxification superfamily protein (.1) AT1G23000 86 / 2e-18 Heavy metal transport/detoxification superfamily protein (.1) AT3G05220 78 / 3e-15 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G37860 73 / 3e-14 Heavy metal transport/detoxification superfamily protein (.1) AT3G56891 65 / 3e-12 Heavy metal transport/detoxification superfamily protein (.1) AT4G35060 63 / 7e-12 HIPP25 heavy metal associated isoprenylated plant protein 25, Heavy metal transport/detoxification superfamily protein (.1) AT1G66240 60 / 4e-11 ATX1, ATATX1 homolog of anti-oxidant 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G026100 [exp] 153 / 4e-43 AT5G27690 100 / 3e-24 Heavy metal transport/detoxification superfamily protein (.1) Potri.014G132000 [exp] 118 / 3e-30 AT5G27690 114 / 4e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G024700 [exp] 117 / 5e-30 AT5G27690 114 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.002G206900 [exp] 110 / 2e-27 AT5G27690 111 / 3e-28 Heavy metal transport/detoxification superfamily protein (.1) Potri.008G128400 [exp] 96 / 8e-22 AT1G23000 137 / 1e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G114300 [exp] 93 / 2e-20 AT1G23000 128 / 2e-33 Heavy metal transport/detoxification superfamily protein (.1) Potri.008G202800 [exp] 90 / 2e-19 AT3G06130 150 / 6e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G091700 [exp] 82 / 2e-17 AT1G23000 99 / 1e-23 Heavy metal transport/detoxification superfamily protein (.1) Potri.014G140600 [exp] 74 / 7e-15 AT5G19090 81 / 2e-17 Heavy metal transport/detoxification superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031495 [exp] 123 / 1e-31 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10015174 [exp] 119 / 9e-30 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10032445 [exp] 96 / 6e-22 AT1G23000 129 / 2e-34 Heavy metal transport/detoxification superfamily protein (.1) Lus10041228 [exp] 89 / 3e-19 AT3G06130 149 / 3e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10031514 [exp] 79 / 1e-15 AT5G19090 118 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10029942 [exp] 77 / 4e-15 AT5G19090 125 / 1e-31 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10004465 [exp] 76 / 1e-14 AT5G19090 122 / 2e-30 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10028529 [exp] 75 / 1e-14 AT1G23000 81 / 4e-17 Heavy metal transport/detoxification superfamily protein (.1) Lus10013911 [exp] 70 / 6e-14 AT1G06330 103 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1) Lus10028426 [exp] 69 / 1e-13 AT4G38580 228 / 4e-78 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [poplar] [flax] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Potri.013G017700.1 pacid=42811778 polypeptide=Potri.013G017700.1.p locus=Potri.013G017700 ID=Potri.013G017700.1.v4.1 annot-version=v4.1 ATGGCAACAGAACCAAAGACAGACGCCAAAACAGAAGCTAAACAAGAGGCCAAAACAGAGGCTAAAGAAGTGGTAGTAGAAGGAAACACAGAACCATCTC TCAAGTACAAGACGTGGGTGTTGAAAGTCTCGGTTCATTGTGAAGGGTGCAAGAGGAAAGTCAAGAAGATCCTGGATAGCATAGATGGTGTGTTCACCAC AGATGTTGATCTAAGACTACAGAAGGCCACAGTAGTAGGGGATGTTGATGCAGATACTTTAATCAAGAGACTGATAAAAAAGACCGGGAAACATGCAGAG CTGTGGCCTGAAAAAGCTGATAATAATCAGAAAGCAGCAATGAAGAAAGGCAAAGCAAAAAACAAAGACAAGGAAAAAGAGAAAGAGAAAGAAAGAGACA GCAATGAAGAAGGTGGTGATGGAGAAAATAAGAAAGAAGTTAAAGTCAAGGCCGAAGTAGTAAAAATGCAAGACCCTTCTCCTAAAAACAGTGAAAATGG CGGCCCTAGTAAAAATAGTGAAGGTGGCGGTCATGTGGTTATTGGCAACGCAAGTGAAGGTGGTGCTGTTCAAGTCAAGGAAGTAAAGGTTAATGAGGTT AATGCTAAGCAACCTGCCACCTCACCGTCCGGTGTCCGGTCACCGGTGGCTGACAAGAAAGTTGGTGGTGAAAGTGAGGTTGTAGCTGAGAAAATTGGTG GTGGGGGCAGTGTAGATGGTAGCAGTGGTGCTAAAAAGAAGAAGAAGAAGGCACATAAAGAGAATAACAGCAATAATAACAATGGTGATGAGGGTGAACA TTCTGGTCACGCACCAGCAGGTACTGGATCACCAGGTCAAGGGCATGTTCAAGTCCAGATCCCACCCCCAGCAAATCACATCCCTCCACGTCACGATCAT GTGTATGACTACCCAGCAACTTACTATGCACCCCCAGTGTATGCTGTGAGTAGCAATGTTGCATACCCTAGTACAAGTTATGGTGCCTCATACCATGCCC CACAGTATTCCTATGCGTATATGCATCCCGGCACCCATCCGGGTACAATTAGTGTACCTCCGCCACCTGATTTCCATCCGTACTACTCATCACAGACGTC TGATTCATTTGAACCTCCGCCACCCGATTTCCATCCGTACTACTCATCACAGACGTCTGATTCGTTTGAGTTTCTTAGCGACGAAAACCCTAACGCGTGC TCAATCATGTGA
AA sequence Show only first row Show all	>Potri.013G017700.1 pacid=42811778 polypeptide=Potri.013G017700.1.p locus=Potri.013G017700 ID=Potri.013G017700.1.v4.1 annot-version=v4.1 MATEPKTDAKTEAKQEAKTEAKEVVVEGNTEPSLKYKTWVLKVSVHCEGCKRKVKKILDSIDGVFTTDVDLRLQKATVVGDVDADTLIKRLIKKTGKHAE LWPEKADNNQKAAMKKGKAKNKDKEKEKEKERDSNEEGGDGENKKEVKVKAEVVKMQDPSPKNSENGGPSKNSEGGGHVVIGNASEGGAVQVKEVKVNEV NAKQPATSPSGVRSPVADKKVGGESEVVAEKIGGGGSVDGSSGAKKKKKKAHKENNSNNNNGDEGEHSGHAPAGTGSPGQGHVQVQIPPPANHIPPRHDH VYDYPATYYAPPVYAVSSNVAYPSTSYGASYHAPQYSYAYMHPGTHPGTISVPPPPDFHPYYSSQTSDSFEPPPPDFHPYYSSQTSDSFEFLSDENPNAC SIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27690			Heavy metal transport/detoxifi...		Potri.013G017700 [exp]	0	1
AT1G26780	MYB	LOF1, ATMYB117	LATERAL ORGAN FUSION 1, myb do...		Potri.019G040900 [exp]	1.00	0.8584
AT3G62200			Putative endonuclease or glyco...		Potri.013G003100 [exp]	1.41	0.8555
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.010G154300 [exp]	2.00	0.8205
AT5G45500			RNI-like superfamily protein (...		Potri.011G040700 [exp]	2.23	0.8048
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G188200 [exp]	2.44	0.8427
					Potri.010G210400 [exp]	6.24	0.7544
AT3G09110			Protein of unknown function (D...		Potri.010G210800 [exp]	6.32	0.7634
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G188000 [exp]	6.48	0.7932
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.005G142600 [exp]	8.48	0.7560
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G187800 [exp]	9.74	0.7369

Compare expression of checked genes

Potri.013G017700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.